Tim

@[email protected]
600 Followers
659 Following
30 Posts

Building the world's most modern, open source, synbio software library.

https://github.com/TimothyStiles/poly

githubhttps://github.com/TimothyStiles/
twitterhttps://twitter.com/TimothyStiles
websitehttps://stiles.io/
TimFeb 3, 2023

Just implemented some basic global alignment for Poly but alignment isn't exactly my forte.

Are there any really good corner cases that I should be testing for or is this as straight forward as it seems?

https://github.com/TimothyStiles/poly/pull/288

#bioinformatics

adding new alignment package and global alignment via Needleman-Wunsch by TimothyStiles · Pull Request #288 · TimothyStiles/poly

Poly needs a basic alignment algo to compare sequences. Needleman-Wunsch is about as basic as it gets as far as I know and its implementation is only 70 lines or so. I'm a little unsure of what sor...

GitHub
TimJan 18, 2023

just finished setting up my steam deck as my dev machine lfg

#SteamDeck

TimDec 19, 2022

what's the most effective way to meme on this pachyderm app?

I know that it's designed for *not* this but I need an outlet for my chaotic energy.

TimDec 17, 2022
Natalie MaDec 17, 2022

Hello all!

I'll post an official introduction (hopefully) in the coming days, but for now I'm keeping it short as I emigrate from Twitter to Mastodon (and specifically to genomics.social thanks to @tim).

In the meantime, please enjoy this punny "ugly sweater" I made for our holiday party!

#molecular #biology #protein #purification #LabLove

TimDec 14, 2022
Guy RohkinDec 13, 2022
Wanted to throw out an intro here~I'm Guy, one of the founders of https://www.scifind.net/, an expert network where scientists go to troubleshoot experimental problems. It's an #openaccess tacit knowledge database (a "lab-rary" 😅) of tips, negative results, optimizations, discussions, methods (stuff that's not in publication really helps get your experiments to work!) Show some love ❤️, take a look, make a post and help out :D #openscience #introduction #ScienceMastodon #biology #synbio #science
The Life Science Collaboration Network

Sci Find is a network of scientific communities where people can find methods to guide their research and troubleshoot together.

Sci Find
TimDec 2, 2022

terraform and kubernetes tutorials have been so easy that I keep thinking that I'm about to be rest of the f*ing owled but it hasn't happened yet.

#terraform #kubernetes #k8s #sysadmin #devops

TimNov 19, 2022
TimNov 6, 2022

Allow me to reintroduce myself on this pachyderm app.

I sell open source synthetic biology software and open source synthetic biology software accessories.

https://github.com/TimothyStiles/poly

#introduction #synbio #syntheticbiology #molecularbiology

TimNov 17, 2022
not a software engineer or a synthetic biologist but a secret third thing
TimNov 14, 2022
Show threadJames Wynn 🧐Nov 14, 2022
@tim if you think that's great, check out their config search! https://nanne.dev/k8s-at-home-search/#/
k8s at home search

TimNov 14, 2022
Show threadJames Wynn 🧐Nov 14, 2022
@tim have you taken a look at the k8s-at-home community? They have some excellent #selfhosted #k8s resources, including a flux template with a lot of really sensible defaults. https://github.com/onedr0p/flux-cluster-template
GitHub - onedr0p/flux-cluster-template: A community opinionated template for deploying a Kubernetes cluster backed by Flux, SOPS, GitHub Actions, Renovate, Cilium and more!

A community opinionated template for deploying a Kubernetes cluster backed by Flux, SOPS, GitHub Actions, Renovate, Cilium and more! - GitHub - onedr0p/flux-cluster-template: A community opinionate...

GitHub