Feargal Ryan 

10 Followers
208 Following
256 Posts

Plumbing new depths of banality

Scientist. Occasional video game and dog poster. South Australian Health and Medical Research Institute (SAHMRI) & Flinders University. Postdoc rep, Australian Bioinformatics & Comp Bio Soc (ABACBS).#Bioinformatics, #multiomics, #microbiome, #immunology #systemsimmunology He/Him. Originally 🇮🇪 but now 🇦🇺

Google Scholarhttps://scholar.google.com/citations?user=9hGB7goAAAAJ&hl=en
Workhttps://research.sahmri.org.au/en/persons/feargal-ryan

Our next ABACBS national seminar is on October 26th (last one before our annual meeting!) and features Prof Barabar Holland from Tas and Jacqueline Rehn from SA to talk about phylogenetics, and #genomics subtyping of cancer. #bioinformatics #research

Register -> https://sahmri.zoom.us/meeting/register/tZ0qdumorzMtE9Vz6IPbI5UV6JS6p5ITSxEJ#/registration

Welcome! You are invited to join a meeting: ABACBS National seminar series. After registering, you will receive a confirmation email about joining the meeting.

Welcome! You are invited to join a meeting: ABACBS National seminar series. After registering, you will receive a confirmation email about joining the meeting.

Zoom

An antibiotic from an uncultured bacterium binds to an immutable target | Cell

New antibiotic dropped.

"we report the discovery of clovibactin.... efficiently kills drug-resistant Gram-positive bacterial pathogens without detectable resistance" #microbiology #antibiotics

https://www.cell.com/cell/fulltext/S0092-8674(23)00853-X

Hey Genomics Mastodon, what’s your favourite tool for making and/or visualising a vertebrate pangenome made from a small number of chromosome-level haplotypes? #genomics #pangenomes #bioinformatics #tools

One of the first projects I've been involved in at Minderoo (running some bioinformatics analyses) has now been published!

'Seafood label quality and mislabelling rates hamper consumer choices for sustainability in Australia'

https://www.nature.com/articles/s41598-023-37066-4

Seafood label quality and mislabelling rates hamper consumer choices for sustainability in Australia - Scientific Reports

Seafood mislabelling and species substitution, compounded by a convoluted seafood supply chain with significant traceability challenges, hinder efforts towards more sustainable, responsible, and ethical fishing and business practices. We conducted the largest evaluation of the quality and accuracy of labels for 672 seafood products sold in Australia, assessing six seafood groups (i.e., hoki, prawns, sharks and rays, snapper, squid and cuttlefish, and tuna) from fishmongers, restaurants, and supermarkets, including domestically caught and imported products. DNA barcoding revealed 11.8% of seafood tested did not match their label with sharks and rays, and snappers, having the highest mislabelling rate. Moreover, only 25.5% of products were labelled at a species-level, while most labels used vague common names or umbrella terms such as ‘flake’ and ‘snapper’. These poor-quality labels had higher rates of mislabelling than species-specific labels and concealed the sale of threatened or overfished taxa, as well as products with lower nutritional quality, reduced economic value, or potential health risks. Our results highlight Australia’s weak seafood labelling regulations and ambiguous non-mandatory naming conventions, which impede consumer choice for accurately represented, sustainable, and responsibly sourced seafood. We recommend strengthening labelling regulations to mitigate seafood mislabelling and substitution, ultimately improving consumer confidence when purchasing seafood.

Nature
The super rich are injecting blood from teenagers to gain ‘immortality’ - BBC Three

Check out this content on BBC Three.

BBC Three

So as all those rich people getting the blood of young people weren't crazy!?

"Systemic exposure of aged male mice to a fraction of blood plasma from young mice containing platelets decreased neuroinflammation in the hippocampus at the transcriptional and cellular level and ameliorated hippocampal-dependent cognitive impairments" #research #science #biology

Platelet factors attenuate inflammation and rescue cognition in ageing | Nature
https://www.nature.com/articles/s41586-023-06436-3

Platelet factors attenuate inflammation and rescue cognition in ageing - Nature

Platelet factors transfer the benefits of young blood to the ageing brain in mice through CXCR3, which mediates the cellular, molecular and cognitive benefits of systemic PF4 on the aged brain.

Nature

The ABACBS national seminar series is returning Aug 31st. Featuring Clara Jiang using statistical genomics to study potential anti-depressive mechanisms of statins & @Psy_Fer_ on nanopore analysis with SLOW5

Register -> https://sahmri.zoom.us/meeting/register/tZ0vd--uqT8vE933U3H9fXcr2Uw8LI5jqJwr#/registration

More info -> https://mailchi.mp/a59746e8a1fc/abacbs-newsletter-august-2023?e=865ac655bf

#bioinformatics #genomics #transcriptomics #RNA

Welcome! You are invited to join a meeting: ABACBS National seminar series. After registering, you will receive a confirmation email about joining the meeting.

Welcome! You are invited to join a meeting: ABACBS National seminar series. After registering, you will receive a confirmation email about joining the meeting.

Zoom
Turns out love was a zero interest rate phenomenon

Short-term dietary changes can result in mucosal and systemic immune depression | Nature Immunology

Based on alternating on/off high fat diet in mice.

"We speculate that in order to guarantee efficient digestion of energy-dense nutrients, a transient downregulation of immunity might have been evolutionarily tolerated. However, this may have come at a price, creating windows of opportunities for pathogenic infections" #immunology #research #science #diet

https://www.nature.com/articles/s41590-023-01587-x

Short-term dietary changes can result in mucosal and systemic immune depression - Nature Immunology

Here, the authors show that short-term consumption of energy-dense diets deficient in fiber, similar to eating patterns for many people today, results in a transient depression of the mucosal and systemic immune systems such that susceptibility to bacterial infection is increased.

Nature

Brings to mind this article from 2012

Categorization of the gut microbiota: enterotypes or gradients? | Nature Reviews Microbiology

"Grouping the microbiota of individual subjects into compositional categories, or enterotypes, based on the dominance of certain genera may have oversimplified a complex situation."

https://www.nature.com/articles/nrmicro2859

Categorization of the gut microbiota: enterotypes or gradients? - Nature Reviews Microbiology

Grouping the microbiota of individual subjects into compositional categories, or enterotypes, based on the dominance of certain genera may have oversimplified a complex situation.

Nature