Mastodawn

We are happy to invite interested parties to the second talk in our new cycle of hybrid #Bioinformatics Seminar hosted jointly by #CEITEC and Faculty of Informatics at the Masaryk University Brno, Czech Republic.

Our online guest today will be Andrea Guarracino from University of Tennessee to talk about his work on #pangenomes

The webinar starts today (Mar 19) at 4PM via an MS Teams link (click the title) available at:

https://bioinf.pages.fi.muni.cz/posts/iv106/

See you there! #genomics #genome

IV106 Bionformatics seminar

We will host guests, mostly online, in the seminar in Spring 2025. Between the public seminars, students will prepare their own presentations for class only. The themes for student presentations this semester will be i) bioinformatics approaches to non-B DNA, and ii) bioinformatics for long-read sequencing and structural variant detection. Public seminar guests will be shared with a “sister seminar” at CEITEC, described here: The Bioinformatics Seminar is a seminar series organized together with the Faculty of Informatics in the interdisciplinary fields of Bioinformatics, Biostatistics, and Computational Biology.

Bioinformatics Group at FI MU

K. D. Murray Sep 3, 2024

At last, we're able to share our latest work on #plant #immune system #pangenomes, focusing on #NLR genes in #arabidopsis

"Pangenomic context reveals the extent of intraspecific plant NLR evolution"

1/n

https://biorxiv.org/cgi/content/short/2024.09.02.610789v1

#plantscience #plants #genomics #plant_pathogens #pathogens #coevolution

Computomics Jan 15, 2024

“Pangenome datasets haven’t been interactively visualized, until now.”
Read why #Pantograph was named a 🎖 Seed World US Top Innovative Product of 2023 🎉

👉 https://www.seedworld.com/introducing-our-top-innovation-winners-part-2/

#pangenomes #innovation #award

Physalia-courses Oct 17, 2023

Registrations are now open for the 2nd edition of the course "Analysis of Prokaryotic Pangenomes" with @jomcinerney & Alan Beavan.

Check it out: https://physalia-courses.org/courses-workshops/prokaritotic-pangenomes/

#Pangenomes #Bioinformatics

Analysis of Prokaryotic Pangenomes

ONLINE, 15-17 April 2024 To foster international participation, this course will be held online

physalia-courses

Rich Edwards 💻🧬🐠 🇦🇺🇬🇧Aug 19, 2023

Hey Genomics Mastodon, what’s your favourite tool for making and/or visualising a vertebrate pangenome made from a small number of chromosome-level haplotypes? #genomics #pangenomes #bioinformatics #tools

CellBioNews Jun 6, 2023

Self-teaching web app improves speed, accuracy of classifying #DNA variations among #cereal varieties.

#agriculture #BRIDGEcereal #pangenomes #AI #haplotypes

https://phys.org/news/2023-06-self-teaching-web-app-accuracy-dna.html

Self-teaching web app improves speed, accuracy of classifying DNA variations among cereal varieties

Agricultural Research Service and Washington State University scientists have developed an innovative web app called BRIDGEcereal that can quickly and accurately analyze the vast amount of genomic data now available for cereal crops and organize the material into intuitive charts that identify patterns locating genes of interest.

Phys.org

Tim Downing May 21, 2023

https://www.biorxiv.org/content/10.1101/2023.05.17.541134v1
Pseudogenes as a neutral reference for detecting #selection in prokaryotic #pangenomes

Anne Kupczok Apr 25, 2023

We wrote a short perspective on the ongoing debate about evolutionary forces shaping microbial pangenomes @GenomeBiolEvol Take home: Be clear what you are talking about and take care to consider all relevant processes
https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evad067/7137407
#Evolution #Pangenomes #HGT #NaturalSelection #PopulationGenetics

Physalia-courses Apr 12, 2023

Just kicked off our course on Prakaryotic #Pangenomes with the legendary Prof James McInerney & the brilliant Dr Alan Beavan. We are ready to delve into the fascinating world of pangenomes and discover their game-changing potential in prokaryotic research.
#evolution #Genomics