Mastodawn

Pipeline release! nf-core/mag v4.0.0 - mag 4.0.0 - Blue Huemul!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/4.0.0

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nf-core Apr 4

Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.4.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.4.0 - Green Gecko · nf-core/mag

Added #745 - Added pipeline parameter spades_downstreaminput to use contigs instead of scaffolds (by @Pranjal-Bioinfo, @jfy133, @GallVp & @sateeshperi). #745 - Added trimmomatic as an additional p...

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nf-core Feb 13

Pipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.3.1 - [2025-03-13] · nf-core/mag

Added #758 - Added new diagram in metro-map style (by @jfy133, @prototaxites, @d4straub) Changed #731 - Updated to nf-core 3.1.2 TEMPLATE (by @jfy133) #755 - Updated to nf-core 3.2.0 TEMPLATE (b...

GitHub

nf-core Dec 19, 2024

Pipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.3.0 - Red Reindeer · nf-core/mag

Added #692 - Added Nanoq as optional longread filtering tool (added by @muabnezor) #692 - Added chopper as optional longread filtering tool and/or phage lambda removal tool (added by @muabnezor) #...

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nf-core Oct 30, 2024

Pipeline release! nf-core/mag v3.2.1 - mag 3.2.1 [2024-10-30]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.1

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.2.1 [2024-10-30] · nf-core/mag

Fixed #707 - Fix missing space resulting in malformed args for MEGAHIT (reported by @d4straub, fix by @jfy133)

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nf-core Oct 27, 2024

Pipeline release! nf-core/mag v3.2.0 - mag 3.2.0 - Salmon Salmon!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.0

#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.2.0 - Salmon Salmon · nf-core/mag

Added #674 - Added --longread_adaptertrimming_tool Where user can chose between porechop_abi (default) and porechop (added by @muabnezor) Changed #674 - Changed to porechop-abi as default adapte...

GitHub

nf-core Oct 4, 2024

Pipeline release! nf-core/mag v3.1.0 - mag 3.1.0 - Pink Panda!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.1.0

#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.1.0 - Pink Panda · nf-core/mag

CautionThis release contains a potentially 'breaking change' for some users. The --gtdbtk_pplacer_scratch flag has been replaced with --gtdbtk_pplacer_useram. Check the parameter documentation for ...

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nf-core Aug 27, 2024

Pipeline release! nf-core/mag v3.0.3 - 3.0.3 [2024-08-27]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.3

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Release 3.0.3 [2024-08-27] · nf-core/mag

Fixed #648 - Fix sample ID/assembly ID check failure when no IDs match (reported by @zackhenny, fix by @prototaxites) #646 - GTDB-Tk directory input now creates a value channel so it runs for all ...

GitHub

nf-core Jul 4, 2024

Pipeline release! nf-core/mag v3.0.2 - 3.0.2 [2024-07-04]!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.2

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Release 3.0.2 [2024-07-04] · nf-core/mag

Changed #633 - Changed BUSCO to use offline mode when the database is specified by the user (reported by @ChristophKnapp and many others, fix by @jfy133) #632 - Use default NanoLyse log of just re...

GitHub

nf-core Jun 10, 2024

Pipeline release! nf-core/mag v3.0.1 - mag 3.0.1!

Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.1

#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics

Release mag 3.0.1 · nf-core/mag

Changed #625 - Updated link to geNomad database for downloading (reported by @amizeranschi, fix by @jfy133) Fixed #618 - Fix CENTRIFUGE mkfifo failures by using work directory /tmp (reported by ...

GitHub