Pipeline release! nf-core/lsmquant v1.0.2 - 1.0.2 - Excited Squid !
A pipeline for processing and analysis of light-sheet microscopy images.
Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.2

#3dunet #imageanalysis #imageprocessing #lightsheetmicrocopy #segmentation #stitching #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/lsmquant v1.0.1 - Excited Squid Patch!
A pipeline for processing and analysis of light-sheet microscopy images.
Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.1

#3dunet #imageanalysis #imageprocessing #lightsheetmicrocopy #segmentation #stitching #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/lsmquant v1.0.0 - 1.0.0 - Excited Squid!
A pipeline for processing and analysis of light-sheet microscopy images.
Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.0

#3dunet #imageanalysis #imageprocessing #lightsheetmicrocopy #segmentation #stitching #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/lsmquant v1.0.0 - 1.0.0 - Excited Squid!
A pipeline for processing and analysis of light-sheet microscopy images.
Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.0

#3dunet #imageanalysis #imageprocessing #lightsheetmicrocopy #segmentation #stitching #nfcore #openscience #nextflow #bioinformatics

New open course at @gisocw! Learn collecting ground truth in the field with @merginmaps, #AI-assisted #segmentation of ground truth polygons with the AI Segmentation plugin by #TerraLab and the full workflow from downloading #Sentinel-2 data, Random Forest classification & accuracy assessment using the Semi-Automatic Classification plugin in #QGIS.

🔗 https://courses.gisopencourseware.org/

#GIS #RemoteSensing #OSGeo #FOSS4G #MachineLearning

Hello!

I've published a neural network for semantically segmenting duckweed fronds in a laboratory context. It also comes with the ability to count fronds using image moments.

The model was trained on 92 manually segmented Lemna minuta plates. Weights are included in the repo with a simple CLI interface to pass images through!

Take a peak!

https://github.com/polyrhiza/LemnaVision

#CNN #segmentation #plantscience #duckweed

Review of the AI Segmentation by TerraLab plugin for QGIS

https://videos.qwast-gis.com/w/cw6ATTq1PeKEBAazkH1XHU

The ZOO Model is a collection of pre-trained deep learning models in ONNX format for the Qgis Deepness plugin to perform automatic object segmentation in orthophotos and satellite imagery #segmentation

https://qgis-plugin-deepness.readthedocs.io/en/latest/main/main_model_zoo.html