Pipeline release! nf-core/nanostring v1.3.3 - v1.3.3 - 2026-01-30 - Micrometer patch 3!
An analysis pipeline for Nanostring nCounter expression data.
Please see the changelog: https://github.com/nf-core/nanostring/releases/tag/1.3.3

#nanostring #nanostringnorm #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/nanostring v1.3.2 - v1.3.2 - 2026-01-15 - Micrometer patch 2!
An analysis pipeline for Nanostring nCounter expression data.
Please see the changelog: https://github.com/nf-core/nanostring/releases/tag/1.3.2

#nanostring #nanostringnorm #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/nanostring v1.3.1 - v1.3.1 - 2025-01-20 - Micrometre patch!

Please see the changelog: https://github.com/nf-core/nanostring/releases/tag/1.3.1

#nanostring #nanostringnorm #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/nanostring v1.3.0 - ## v1.3.0 - 2024-08-27 - Micrometre!

Please see the changelog: https://github.com/nf-core/nanostring/releases/tag/1.3.0

#nanostring #nanostringnorm #nfcore #openscience #nextflow #bioinformatics

🎓 #biocsmorgasbord! starts today! New workshop added ✨ Learn "Introduction to SpatialOmicsOverlay" with the #NanoString #GeoMx Team 🧬💻

📅 May 22-26
➡️ https://gallantries.github.io/video-library/modules/bioconductor
#Bioinformatics #RStats #SpatialOmics

#bioinformatics #genomics

Do I know anyone working with #nanostring #GeoMx? This is the first GeoMx dataset we've received.

There appear to be several packages for upfront QC and transfer to Seurat of the *processed* data in R. But I wasn't sure if there was anyone with recommendations for taking FASTQ to DCC. The instructions for installing and running the Nanostring pipeline don't seem very friendly to pure command-line interaction on a local server of in self-contained docker image.