Mastodawn

Kenny Kim 🧬Nov 28, 2024

Marc Robinson-Rechavi Nov 28, 2024

As promised, a thread on the first manuscript from a large project we started several years ago on expression variability in fishes, led by the amazing Christa Bucao @dee_unil
https://www.biorxiv.org/content/10.1101/2024.11.11.623020v1

Kenny Kim 🧬Nov 14, 2024

Marc Robinson-Rechavi Nov 14, 2024

New lab preprint! I'll write a thread about it as soon as I have time, but we show that gene expression variability between outbred fish is under organ-specific selection
https://www.biorxiv.org/content/10.1101/2024.11.11.623020v1
@dee_unil #EvoDevo #MolecularEvolution

Kenny Kim 🧬Nov 8, 2024

📑 EvoDevo Papers Nov 7, 2024

Hi! I'm a bot that shares research papers in EvoDevo (or Evolutionary Developmental Biology).

Currently, I index a few journals in the field and post links to articles that were published recently, one per day.

Since my posts are set to “quiet public”, they don't appear on Mastodon's feeds or hashtags searches. So, please, boost the papers you find worth sharing!

Any feedback is welcome. Thanks :)

#Introduction #EvoDevo #Papers #Research #DevBio #EvoBio

Kenny Kim 🧬Nov 4, 2024

New preprint !! 🌟 🤩 In this study we examined reproductive isolation among broadcast spawning and sympatric lineages of the tropical echinoderm Stichopus cf. horrens. https://www.biorxiv.org/content/10.1101/2024.10.29.620868v1

Kenny Kim 🧬Oct 30, 2024

bioRxiv Oct 30, 2024

Unveiling the Functional Fate of Duplicated Genes Through Expression Profiling and Structural Analysis https://www.biorxiv.org/content/10.1101/2024.10.29.620890v1?med=mas

Kenny Kim 🧬Oct 25, 2024

DEE UNIL Oct 24, 2024

Up next for the DEE External Seminar is Arnau Sebé-Petrós (hosted by @marcrr Marc Robinson-Rechavi) for a talk on metazoan cell type diversity. Thursday, October 31st at 12:15 at the Biophore Amphitheater or via REC UNIL.

Kenny Kim 🧬Oct 22, 2024

Mark Ziemann 🇺🇦🌻🦩Oct 22, 2024

[New paper]: Two subtle problems with over-representation analysis.
ORA is a type of enrichment analysis that analyses over-represented functional categories in gene lists. These tools have accumulated ~190k citations, but they have subtly different behaviours. Here we unpack the differences and investigate two subtle problems in some implementations, which may have negatively impacted those 190k research papers.
https://doi.org/10.1093/bioadv/vbae159
#genomics #bioinformatics

Two subtle problems with over-representation analysis

Abstract. Over-representation analysis (ORA) is used widely to assess the enrichment of functional categories in a gene list compared to a background list.

OUP Academic

Kenny Kim 🧬Oct 17, 2024

FlyBase Oct 17, 2024

New FlyBook chapter!

An anatomical atlas of Drosophila melanogaster—the wild-type https://academic.oup.com/genetics/article/228/2/iyae129/7750380

An anatomical atlas of Drosophila melanogaster—the wild-type

Abstract. Scanning electron microscopy is the method of choice to visualize the surface structures of animals, fungi, plants, or inorganic objects at the h

OUP Academic

Kenny Kim 🧬Oct 16, 2024

Entomological Soc. of America Oct 16, 2024

Arthropod Photo of the Week: October 16, 2024
Orange skipperling
Copaeodes aurantiaca
Lepidoptera: Hesperiidae
By Rodolfo Vega Littlewood (https://rvlfoto.weebly.com), Hermosillo, Sonora, Mexico
#arthropodPOTW
#entomology #insects #photography

RVL FOTOGRAFÍA

Con mas de 10 años de experiencia en varios géneros. Premiado y publicado por diferentes medios e instituciones. Desde fotografía social y comercial, hasta mascotas y naturaleza, explora mi...

RVL FOTOGRAFÍA

Kenny Kim 🧬Oct 11, 2024

so frustrating when a species have 4 genomes with all papers saying that the quality is good but data isnt available.😞