Eoin Galligan

@eoingalligan
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I manage university and hospital collaborations at Abzu. We are seeking to support research groups that may lack expertise in data science, SPSS or statistics. Reach out to me at [email protected]

What can Abzu do? Last year we published on how combining our #symbolicregression tech with Cox prop hazard model improves ability to predict death due to #heartfailure. Cox method is available on Abzu's new platform. Early access is free.

https://tinyurl.com/5jn7w8z7
#cardiovascular #AcademicMastodon #academicchatter

Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths - BMC Medical Informatics and Decision Making

Background Heart failure is a clinical syndrome characterised by a reduced ability of the heart to pump blood. Patients with heart failure have a high mortality rate, and physicians need reliable prognostic predictions to make informed decisions about the appropriate application of devices, transplantation, medications, and palliative care. In this study, we demonstrate that combining symbolic regression with the Cox proportional hazards model improves the ability to predict death due to heart failure compared to using the Cox proportional hazards model alone. Methods We used a newly invented symbolic regression method called the QLattice to analyse a data set of medical records for 299 Pakistani patients diagnosed with heart failure. The QLattice identified non-linear mathematical transformations of the available covariates, which we then used in a Cox model to predict survival. Results An exponential function of age, the inverse of ejection fraction, and the inverse of serum creatinine were identified as the best risk factors for predicting heart failure deaths. A Cox model fitted on these transformed covariates had improved predictive performance compared with a Cox model on the same covariates without mathematical transformations. Conclusion Symbolic regression is a way to find transformations of covariates from patients’ medical records which can improve the performance of survival regression models. At the same time, these simple functions are intuitive and easy to apply in clinical settings. The direct interpretability of the simple forms may help researchers gain new insights into the actual causal pathways leading to deaths.

BioMed Central

I love this 🤓 Do PhDs/Postdocs consider interpersonal relationships or culture in sufficient depth when evaluating labs, people or competitors? I loved being a tech geek but needed to gain empathy on how others see the world.
#phdchat #postdoc #postdocchat
#AcademicMastodon #academicchatter

https://www.science.org/content/article/after-leaving-two-postdocs-two-years-i-found-lab-s-right-me

After leaving two postdocs in two years, I found a lab that’s right for me

“No matter how unconventional my postdoc experience might look on paper, I’m grateful for the experience,” this researcher writes

@academicchatter
Abzu would like to learn from biomedical #phdchat & #postdocs: What stats / datascience methods are needed in your field? We're creating a platform that could help your field and are seeking critique/ input from you.

Examples:
- Logit statistical analysis
- Linear statistical analysis
- Cox Proportional Hazards modeling
- Logist regression
- Linear regression
#phdtalk

Phd or Postdoc performance is not simply pushing yourself to repeat experiments that failed or working endless hours.

Unsurprisingly - university scientists are human 🙂 Mistakes are all part of your lab's collective growth and discovery.
#phdchat #AcademicTwitter #lifescience

Many 'voices' talk about #productivity in #lifescience academic research - but do they engage with #phdchat?
I've sat with postdocs in tears because of pressure. Imagine if mistakes, female Deans were celebrated & academic burnout openly discussed. What does #phdchat think/feel?
#academicchatter
When you started your time in #clinicalresearch, what was your first thoughts on learning stats and SPSS etc? For example: would you manage logistic regression modeling yourself - or does your lab have external support? #statistics #phdchat #phdlife #academicmastodon