#Museomics highlights the importance of scientific museum collections.

At a symposium in Paris, a University of São Paulo professor of #zoology explains how new technologies allow for the use of degraded DNA from specimens preserved for decades, contributing to the advancement of scientific knowledge and the conservation of

https://www.eurekalert.org/news-releases/1087512 #museums #collections #science

🧬Interested in #Museomics?
Join us to learn how to generate & analyse genomic data from natural history collections with hands-on bioinformatics workflows

https://www.physalia-courses.org/courses-workshops/museomics/

Museomics: An Introduction to Genomic Analyses of Natural History Collections

3-7 November To foster international participation, this course will be held online

physalia-courses

New preprint out where we compare WGS with target enrichment for old museum specimens of moths in the families Epicopeiidae and Sematuridae! Great work done by co-authors Elsa, Victoria and Marianne!

#Lepidoptera #museomics #Epicopeiidae #Sematuridae #Geometroidea

https://www.biorxiv.org/content/10.1101/2023.08.21.553699v1

Precious cargo of canasteros from Peru is out of quarantine. 🥳 Genetic samples already sequenced but these wings need to be photographed for estimations of flight performance. Data galore. #museomics #biodiversitydata #Furnariidae
Returning to taxonomy, my 6th paper of the year was a study on the very weird frogs of the Gephyromantis subgenus Laurentomantis, describing four new species, with the aid of #Museomics to clarify type specimens. This was led by Miguel Vences.
http://doi.org/10.3897/vz.72.e78830
An integrative taxonomic revision and redefinition of Gephyromantis (Laurentomantis) malagasius based on archival DNA analysis reveals four new mantellid frog species from Madagascar

The subgenus Laurentomantis in the genus Gephyromantis contains some of the least known amphibian species of Madagascar. The six currently valid nominal species are rainforest frogs known from few individuals, hampering a full understanding of the species diversity of the clade. We assembled data on specimens collected during field surveys over the past 30 years and integrated analysis of mitochondrial and nuclear-encoded genes of 88 individuals, a comprehensive bioacoustic analysis, and morphological comparisons to delimit a minimum of nine species-level lineages in the subgenus. To clarify the identity of the species Gephyromantis malagasius, we applied a target-enrichment approach to a sample of the 110 year-old holotype of Microphryne malagasia Methuen and Hewitt, 1913 to assign this specimen to a lineage based on a mitochondrial DNA barcode. The holotype clustered unambiguously with specimens previously named G. ventrimaculatus. Consequently we propose to consider Trachymantis malagasia ventrimaculatus Angel, 1935 as a junior synonym of Gephyromantis malagasius. Due to this redefinition of G. malagasius, no scientific name is available for any of the four deep lineages of frogs previously subsumed under this name, all characterized by red color ventrally on the hindlimbs. These are here formally named as Gephyromantis fiharimpe sp. nov., G. matsilo sp. nov., G. oelkrugi sp. nov., and G. portonae sp. nov. The new species are distinguishable from each other by genetic divergences of >4% uncorrected pairwise distance in a fragment of the 16S rRNA marker and a combination of morphological and bioacoustic characters. Gephyromantis fiharimpe and G. matsilo occur, respectively, at mid-elevations and lower elevations along a wide stretch of Madagascar’s eastern rainforest band, while G. oelkrugi and G. portonae appear to be more range-restricted in parts of Madagascar’s North East and Northern Central East regions. Open taxonomic questions surround G. horridus, to which we here assign specimens from Montagne d’Ambre and the type locality Nosy Be; and G. ranjomavo, which contains genetically divergent populations from Marojejy, Tsaratanana, and Ampotsidy.

Vertebrate Zoology
I appear on the latest episode of the New Species Podcast, talking about the score of new frog species we described from Madagascar. This is #IntegrativeTaxonomy and #Museomics in action. Check it out:
https://anchor.fm/newspeciespodcast/episodes/20-New-Species-of-Frogs-with-Mark-Scherz-e1soniq
20 New Species of Frogs with Mark Scherz by New Species

The frogs are back! In a year of episodes rich in amphibians, New Species rounds out 2022 with Dr. Mark Scherz and his paper describing 20 new species of frogs from Madagascar. This paper has everything! Barcode fishing, large-scale scientific collaboration, and plenty of fascinating frog facts. The real question I should have asked Mark is how he became an expert in Brygoomantis calls - as you’ll hear in this episode, he’s very accomplished. Do you want to share your thoughts on the podcast? Please do so here: https://forms.gle/fnXUuiNknRFadXWj6 Mark Scherz’s paper “An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar” is in Volume 7 Issue 2 of Megataxa. It can be found here: https://doi.org/10.11646/megataxa.7.2.1 New Species: M. ambohimitombi marefo, M. ambohimitombi miloko, M. mahery, M. steinfartzi, M. incognitus, M. jonasi, M. katae, M. kortei, M. riparius, M. fergusoni, M. georgei, M. jahnarum, M. marintsoai, M. grubenmanni, M. gudrunae, M. augustini, M. bletzae, M. brevirostris, M. eulenbergeri, M. glosi., M. stelliger, M. manerana, M. manerana fotaka, and M. manerana antsanga. Episode image (M. stelliger) courtesy Miguel Vences Find Mark on twitter: @MarkScherz Or on Mastedon: @MarkScherz @EcoEvo.social Or how about Tumblr: MarkScherz.tumblr.com Or check out his website: MarkScherz.com Mark’s other content includes: Anatomy Insights: www.youtube.com/AnatomyInsights Squamates Podcast: http://squamatespod.com/ Be sure to follow New Species on Twitter (@PodcastSpecies) and like the podcast page on Facebook (www.facebook.com/NewSpeciesPodcast) Music in this podcast is "No More (Instrumental)," by HaTom (https://fanlink.to/HaTom) If you have questions or feedback about this podcast, please e-mail us at [email protected] If you would like to support this podcast, please consider doing so at https://www.patreon.com/NewSpeciesPod

Anchor
New #OpenAccess book
"Molecular identification of plants: from sequence to species"
A comprehensive and up-to-date overview of the topic.
#eDNA #Museomics #Forensics
https://ab.pensoft.net/book/98875/list/2/
Molecular identification of plants: from sequence to species

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Advanced Books
We are grateful to the Natural History Museum - Tring and
the Zoology Museum in Cambridge for providing historical samples. To Nature Seychelles for assistance on the original collection of modern samples. To MSCActions, GrundforskFond, DefraGovUK, ELSA and dgeci for funding 7/7 #Museomics #EvolutionaryBiology #conservationgenomics
@RobLanfear I mostly work on #phylogenetics and #phylogenomics of parasitic wasps, although lately I've also branched into beetles and nematodes. Mostly interested in resolving poorly defined lineages using #Museomics but also using empirical and simulation data to understand why some clades are difficult.

An #Introduction:

I'm the #Curator of #Herpetology at the #NaturalHistoryMuseum of #Denmark, and #AsstProf of #Vertebrate #Zoology at the University of Copenhagen.

I work in evolutionary and systematic herpetology, working on a variety of topics including #museomics, #macroevolution, #convergence, #phylogeography, #speciation, #systematics, and #taxonomy. I mostly work on the #amphibians and #reptiles of #Madagascar. #Miniaturisation is my jam.