SeedFold: Scaling Biomolecular Structure Prediction

#Biology #Biomolecules

https://hgpu.org/?p=30497

SeedFold: Scaling Biomolecular Structure Prediction

Highly accurate biomolecular structure prediction is a key component of developing biomolecular foundation models, and one of the most critical aspects of building foundation models is identifying …

hgpu.org
BoltzGen:Toward Universal Binder Design

We introduce BoltzGen, an all-atom generative model for designing proteins and peptides across all modalities to bind a wide range of biomolecular targets. BoltzGen builds strong structural reasoni…

hgpu.org

The microring resonator (#MRR) operates by the principle of evanescent field.

By what? 🤔

Sensors that operate by the principle of an #evanescent field utilizes the extension of the field inside the MRR into the surrounding. The range of this extension is in the order of the wavelengths of the radiation, ie in our case 1.5 micrometers. For #biodetection applications, target #biomolecules caused a variation of the refractive index in the surrounding and a shift in the resonance peak.

See the figure below from E. Luan et al (2018) https://doi.org/10.3390/s18103519

#bioelectronic #microelectronic #biosensor @JLBe @tuberlin

Engineering Supercomputing Platforms for Biomolecular Applications

#CUDA #ROCm #Biology #Biomolecules #MolecularDynamics #HPC #Physics #Package

https://hgpu.org/?p=29954

Engineering Supercomputing Platforms for Biomolecular Applications

A range of computational biology software (GROMACS, AMBER, NAMD, LAMMPS, OpenMM, Psi4 and RELION) was benchmarked on a representative selection of HPC hardware, including AMD EPYC 7742 CPU nodes, N…

hgpu.org
SciTech Chronicles. . . . . . . . .Mar 14th, 2025

  Looking into their eyes I see they're running too. Vol II No 66 457 links Curated Black holes may transition into 'white holes', ejecting ...

Organic Chemistry - Labelling and Manipulating Biomolecules with Light - Beilstein-Institut

Open Source Œestrogen − Mary Maggic. 2015

PeerTube

Coming up next week: Online #BeilsteinTalk Labelling and manipulating #biomolecules with light" with Nadja Simeth, @unigoettingen, on 📅 March 13, 2025 🕒 3–4 pm CET.
Register for FREE! 🔗 https://www.beilstein-institut.de/en/talks/organic-chemistry-labelling-and-manipulating-biomolecules-with-light/?M=y

#photochemistry #SupramolecularChemistry #peptides #BeilsteinTalks

Organic Chemistry - Labelling and Manipulating Biomolecules with Light - Beilstein-Institut

Save the date: 📅 March 13, 2025 🕒 3–4 pm CET:

Online #BeilsteinTalk "Labelling and manipulating #biomolecules with light" with Nadja Simeth, @unigoettingen.

Register for FREE! 🔗 https://www.beilstein-institut.de/en/talks/organic-chemistry-labelling-and-manipulating-biomolecules-with-light/?M=y

#photochemistry #SupramolecularChemistry #peptides #BeilsteinTalks

Organic Chemistry - Labelling and Manipulating Biomolecules with Light - Beilstein-Institut

23-Jan-2025
Terahertz pulses induce #chirality in a non-chiral crystal
https://www.eurekalert.org/news-releases/1071529

intriguing. Could perhaps another far-fetched explanation for the #homochirality of #biomolecules be based on this? #science #physics #OriginOfLife #astrobiology

Terahertz pulses induce chirality in a non-chiral crystal

Chirality is a fundamental property of matter that determines many biological, chemical and physical phenomena. Chiral solids, for example, offer exciting opportunities for catalysis, sensing and optical devices by enabling unique interactions with chiral molecules and polarized light. These properties are however established when the material is grown, that is, the left- and right-handed enantiomers cannot be converted into one another without melting and recrystallization. Researchers at the Max Planck Institute for the Structure and Dynamics of Matter (MPSD) and the University of Oxford have shown that terahertz light can induce chirality in a non-chiral crystal, allowing either left- or right-handed enantiomers to emerge on demand. The finding, reported in Science, opens up exciting possibilities for exploring novel non-equilibrium phenomena in complex materials.

EurekAlert!