Basecalling on RTX 3060, dorado's ram usage never goes above 8GB~ on 12GB GPU. What are the chances the memory usage is specifically tuned for 8GB range to account for majority of consumer level GPUs out there?

I wonder if I can manually tinker to improve performance here.

#bioinformatics #basecalling #dorado

Can you imagine calling #m6A modifications from raw #RNA #nanopore reads just with #basecalling?

Let me introduce you to #m6ABasecaller

https://doi.org/10.1101/2023.11.13.566801

A release note for #bioinformatics #basecalling fans! We've released wf-basecalling: wrapping the experimental #nanopore #Dorado caller in an easy to use #nextflow pipeline, and incorporated it into wf-human-variation 0.4.0 for an end-to-end base calls to variant calls workflow!
https://labs.epi2me.io/epi2me-labs-22.11.01-release/
EPI2ME Labs 22.11.01 Release

Dear Nanopore Community, With this month’s update to our EPI2ME Labs product we are delighted to…

EPI2ME Labs
@benjaminv Should've tagged #gpu #resources #nanopore #basecalling as well ;) This looks interesting, going to check it out -- thanks!