Caroline Beck

22 Followers
44 Following
40 Posts
Mostly Harmless
Developmental Biologist based in New Zealand, researching regeneration and genetic epilepsy using Xenopus tadpoles.
#DEE #epilepsy #regeneration #Xenopus #DevBio #neuroscience
Twitter@Frog_squisher
InstitutionUniversity of Otago

The slime mold video to end all slime mold videos is out! https://www.youtube.com/watch?v=k_GTIL7AECQ

#slimemold #blob

True Facts: The Smartest Slime

YouTube
One of the @[email protected] frogs being effortlessly cute this morning.

I taught two 8-wk courses this fall @johnshopkinssph and wanted to share the resources (built in #quarto !) in case others starting in #Rstats #DataScience find it useful

🤩 Intro to R
https://stephaniehicks.com/jhustatcomputing2022/schedule

💃 More adv R #Git #CommandLine #SQL #APIs
https://stephaniehicks.com/jhustatprogramming2022/schedule

Statistical Computing (BSPH 140.776) - Schedule

Schedule and course materials for Statistical Computing (JHSPH Biostatistics 140.776 Fall 2022).

Don’t Ban ChatGPT in Schools. Teach With It.

OpenAI’s new chatbot is raising fears of cheating on homework, but its potential as an educational tool outweighs its risks.

The New York Times

This is fascinating! The Braille Institute has developed a font - free to download - that's designed to be clearer for readers with lower vision.

An example of one of the aspects of low legibility that they tackled attached.

It's named Atkinson Hyperlegible. Atkinson was the Institute's founder - https://en.wikipedia.org/wiki/J._Robert_Atkinson

Here's where you can read about the font and download it: https://brailleinstitute.org/freefont

#Accessibility

Via @tombofnull

J. Robert Atkinson - Wikipedia

RT @MGStowers
Thrilled to share a preprint of Shuonan He's final thesis chapter demonstrating a molecular basis for segment polarity in the sea anemone Nematostella.

https://www.biorxiv.org/content/10.1101/2023.01.09.523347v1

Open Science #OpenScience #OpenData #neuroscience #astrocytes #zebrafish

We published whole-brain neuron+glia light-sheet calcium imaging data...

... from Mu et al., Cell 2019, 12 fish, 5.9 TB, >1,000,000 cells total + behavior, NWB format

Data: https://dandiarchive.org/dandiset/000350

Paper: https://www.cell.com/cell/fulltext/S0092-8674(19)30621-X

Thank you CatalystNeuro + authors for implementing, and
Simons Foundation Global Brain for supporting this effort!

Data is open for everyone to use. We are also happy to actively collaborate!

DANDI Archive

Beautiful work by @opourquie & co implicating NAD+/NADH ratio in species specific rate of the segmentation clock

Lots of fascinating data

Intriguingly inhibition of protein degradation doesn't affect oscillation period. Argues Hes7 negative feedback not mechanism for period

https://www.nature.com/articles/s41586-022-05574-4

Metabolic regulation of species-specific developmental rates - Nature

An in vitro system that recapitulates temporal characteristics of embryonic development demonstrates that the different rates of mouse and human embryonic development stem from differences in metabolic rates and—further downstream—the global rate of protein synthesis.

Nature

Nice summary by Ken Zaret of our (@[email protected]) recent work investigating the genomic mechanisms interpreting SHH morphogen signaling in the neural tube

Two ways to skin a new cell fate https://www.cell.com/developmental-cell/fulltext/S1534-5807(22)00846-2#.Y716CdxYzO8.twitter

Hey! An update. I've actually made such a Bioinformatics-centered server (see the message I'm replying to!). You can join here: https://discord.com/invite/arPBahn8N6

Boosts are very welcome, even if you're not interested. Thank you!

I'm going to re-tag this: #bioinformatics #discord #algorithm #datascience #tools #r #python #genomics #transcriptomics #multiomics #lab #collaboration #academia #computerscience #biology #science

Join the Bioinfo.ds Discord Server!

We're a community for all things Bioinformatics: tools, pipelines, news, learning and teaching. | 386 members

Discord