Carsen Stringer (she/her)Make your next discovery using #Rastermap, a visualization method for large-scale neural data in #python. Paper now out: https://www.biorxiv.org/content/10.1101/2023.07.25.550571v1 (CLICK ON THE GIF) #neuroscience
You can explore your data in the graphical user interface: #Rastermap
#Rastermap finds single-trial sequences of neural activity in a virtual reality experiment:
#Rastermap finds movement-related structure in spontaneous activity in complete darkness:
#Rastermap sorting of #hippocampus data from Grosmark & Buzsaki, 2016:
#Rastermap sorting of wholebrain #zebrafish activity from Chen et al, 2018:
#Rastermap sorting of neurons from #ReinforcementLearning agents playing Atari games:
Learn more on our github: https://github.com/MouseLand/rastermap. #Rastermap is fast thanks to #python #numpy, #scipy, #numba, and #scikit-learn. The GUI is powered by #pyqt and #pyqtgraph, and supports npz, npy, mat and #nwb ophys files.
Excited to see new datasets explored with this! If you have issues, please post an issue on the #Rastermap github: https://github.com/MouseLand/rastermap/issues.
kevinbolding@computingnature Here are some OB glomeruli rastermapped while the mouse is running around smelling things in the little colored circles. Definitely helped convert a noisy mess into something that makes sense.
manishawow, this happened within a day of announcing this #OpenSource project! thank you for sharing this @kevinbolding
Congratulations and thank you @computingnature for sharing both the source code for #Rastermap and previous #OpenData
So stoked and look forward to this becoming the norm where scientists don't have to keep reinventing the wheel in their own labs
#neuroscience #AcademicChatter @academicchatter @academicsunite
@manisha @computingnature @academicchatter @academicsunite ah well this didn’t happen in a day. there was some example Matlab code that had been made available previously. glad it’s gotten a more formal grounding/distribution framework though now.