I love the incremental improvements that we're making to developer experience across the board for our #OpenSource tools at #Seqera

Each one is a small addition, but together they help to prevent minor paper cuts and improve bioinformaticians lives a little every day ✨

https://mstdn.science/@multiqc/114307005997911179

MultiQC (@[email protected])

Attached: 1 image Another quality of life improvement is that we now have a #JSONschema via @[email protected] for #MultiQC configuration files 🎉 This has been added to schemastore.org so that config files in #VSCode & other IDEs automatically get integrated error checking as you type, see https://docs.seqera.io/multiqc/getting_started/config#json-schema-validation

mstdn.science

By default, the #Seqera #Containers web interface searches the #bioconda and #condaforge channels 📦

But did you know that you can prepend your search with *any* conda channel?

Try it out: https://seqera.io/containers/

Containers | Seqera

Fetch Docker & Singularity containers with any combination of Conda / PyPI packages, for free.

This is the biggest new @multiqc feature that we've shipped in a while!

Grab AI summaries of your analysis right in your report, from #Seqera AI, #OpenAI, #AnthropicAI or copy to anywhere else with a click :)

Looking forward to hearing what people make of it! 🎉

https://mstdn.science/@multiqc/113878399284732097

MultiQC (@[email protected])

Attached: 1 image MultiQC v1.27 was released yesterday. It includes one major new feature: === ✨ AI summaries ✨ === LLMs are a natural next step for helping scientists understand large datasets. @multiqc now has built-in integration with #Seqera AI as well as #OpenAI and #AnthropicAI 🤖 The premise is fairly simple: #MultiQC builds prompts with sample data and sends these to LLMs to get summaries. This can be done at report-generation time and also *interactively* on-demand when reading the report.

mstdn.science

We made this functionality as flexible as possible. It works out of the box with #Seqera AI and also #OpenAI and #AnthropicAI.

Reports also have "Copy prompt" options to paste into whatever LLM you like.

Read more in the blog post: https://hubs.ly/Q033KvM10

AI Summaries now available in MultiQC | Seqera

AI Summaries allow MultiQC users to quickly generate summaries of their reports, offering insights without needing to comb through every detail manually.

MultiQC v1.27 was released yesterday. It includes one major new feature:

=== ✨ AI summaries ✨ ===

LLMs are a natural next step for helping scientists understand large datasets. @multiqc now has built-in integration with #Seqera AI as well as #OpenAI and #AnthropicAI 🤖

The premise is fairly simple:
#MultiQC builds prompts with sample data and sends these to LLMs to get summaries.

This can be done at report-generation time and also *interactively* on-demand when reading the report.

任意のバイオインフォマティクスツールを詰め込んだコンテナイメージが簡単に作成できる Seqera Containers
https://dev.classmethod.jp/articles/easily-create-bioinformatics-tool-containers-with-seqera-containers/

#dev_classmethod #Bioinformatics #seqera

任意のバイオインフォマティクスツールを詰め込んだコンテナイメージが簡単に作成できる Seqera Containers | DevelopersIO

研究者がDockerfileやApptainerレシピを書く時代は終わったのかもしれない。

クラスメソッド発「やってみた」系技術メディア | DevelopersIO
Busy #Nextflow and #Seqera calendar ahead.

The world of #bioinformatics containers just got much, much larger - and much much easier, too.

Check out today's Tech Short to learn about #Seqera Containers, a new community service that takes the friction out of using containers in your workflows. It includes Arm64 support (for Graviton fans, among others) and lets you dynamically pull containers built from BioConda, Conda Forge, PyPI, and soon even @Spackpm.

This is a resource for **everyone**.

https://buff.ly/3KlKvis

Announcing Seqera Containers - supported by AWS

YouTube

I keep thinking why didn’t I start using #Nextflow earlier then I realise it’s only a relatively new workflow system.

It’s just #Nextflow, #Seqera and the community are moving and advancing so quickly that you just assume this has been mainstream for longer 🚀

Um post sobre os últimos 30 dias🤯 Retiro do @[email protected] na Suécia, Hackathon do nf-core e o @[email protected] Summit 2022 na Espanha, e retiro da @[email protected]! Tanta coisa legal!

https://mribeirodantas.xyz/blog/index.php/pt/2022/10/27/nextflow-e-nf-core-novidades-quentinhas/

#nextflow #nfcore #seqera #nextflowsummit #bioinformatica #bioinformatics

Nextflow e nf-core: Novidades quentinhas! - The Dataist Storyteller

Reading time: 7 minutes Leia a versão em inglês clicando aqui. Escrevo esse post ainda em terras Espanholas, na cidade de Barcelona. Para quem não tem me acompanhado nas redes sociais, após concluir o doutorado na França em Julho fui direto à Barcelona para realizar a semana de onboarding na Seqera Labs, empresa que me contratou para ser o ...

The Dataist Storyteller