timing may not be great given the recent re-organization at github, but browsing #Bioconductor source code and packages is going to be nicer (for now at least) when the package sources and the build system are transitioned to github - #r-universe github.com/bioconductor... #rstats #Bioinformatics

GitHub - bioconductor-source/d...
GitHub - bioconductor-source/docs: Documentation relating to the new build system and GitHub hosted repositories

Documentation relating to the new build system and GitHub hosted repositories - bioconductor-source/docs

GitHub

@rOpenSci an update: the bug has been fixed in the development version of {pak} and {pkgbuild}. you can down use `pak-version: "devel"` in your workflow to use it in your workflows

see https://github.com/hubverse-org/hubValidations/issues/235#issuecomment-2863055858

#RStats #RUniverse #GitHub

GitHub Actions setup-r-dependencies@v2 step failing to install hubValidations with malformed DESCRIPTION error · Issue #235 · hubverse-org/hubValidations

CDC is conducting an influenza forecasting activity for selected countries and has been utilizing hubverse to coordinate model submissions and evaluations. As part of this workflow, we use hubValid...

GitHub

If you use a packages from the #RUniverse on #GitHub using r-lib/setup-r-dependencies and are seeing an error that says "malformed DESCRIPTION" it might just be this bug: https://github.com/r-lib/pak/issues/771

In short: A recent deploy of the R Universe added a `File:` field in /src/contrib/PACKAGES that is causing the tarball to be named as the sha256 hash and {pkgbuild} (used by {pak}, which is used by r-lib/setup-r-dependencies) does not like that one bit.

One solution to work around this is to add the GitHub sources to the `packages:` field:

```
with:
packages: |
github::[user]/[repo]@[version]
```

#RStats @rOpenSci

Package unable to install with "malformed DESCRIPTION" error · Issue #208 · r-lib/pkgbuild

Possibly related to r-lib/pak#632 and r-lib/pak#767 From hubverse-org/hubValidations#235, we were getting an error in the r-lib/actions/setup-r-dependencies@v2 action. I was able to reproduce it wi...

GitHub

@Lluis_Revilla @bioinfhotep "OS_type" is correctly picked up by #Runiverse !

Build graphics show that {kissatire} is unix only and has a little minus sign for the build status on the right. :)

#RStats

I just added a package to my #RUniverse packages.json but there was a problem updating the registry (was working fine before). The logs are here. https://github.com/r-universe/ellakaye/actions/runs/14268759000/job/39996861708. The problem seems to be in the line "fatal: could not read Username for 'https://github.com': terminal prompts disabled”. Is this a temporary glitch? If not, any ideas how to fix it? I have a PAT set up that seems to be working fine in other contexts.
Update universe · r-universe/ellakaye@cc9eb73

Source universe for: ellakaye. Contribute to r-universe/ellakaye development by creating an account on GitHub.

GitHub

We're excited and grateful that @RConsortium has named R-Universe their newest top-level project! This means sustained support for @rOpenSci's platform for discovery and publishing of R packages. We've got big plans ahead, especially to support building large, collaborative repositories on top of R-Universe.

All praise to @jeroenooms, R-Universe's lead developer, who will also join the Consortium's Infrastructure Steering Committee.

Read more at https://ropensci.org/blog/2024/12/03/r-universe-r-consortium-tlp/ #rstats #runiverse

R-Universe Named R Consortium Top-Level Project

We're excited to announce R-Universe has been named the R-Consortium's newest Top-Level Project.

🚀 Today is Community Call Day!

Navigating the R ecosystem using R-universe
With @jeroenooms - 09:00 PDT|16:00 UTC • online 🌐
Link to join + add to your calendar: https://ropensci.org/commcalls/nov2024-r-universe/

Jeroen will share details on what #RUniverse is and an update on what you can do with it today. He will also discuss the future of R-universe and how it can be used to navigate the #RStats ecosystem.

Join us to learn more about R-Universe and how you can use it to improve your R package development workflow.

Navigating the R ecosystem using R-universe · Community Call

An update on what R-universe is and what you can do with it today.

I've decided trying out to try out the #shinylive magic on a shiny app using the `sf` package. However, `sf` doesn't seem to work, and leads to error messages, both using the cran and the #runiverse version. Things get stuck when exporting the app, with either an "access denied" here: https://repo.r-wasm.org/bin/emscripten/contrib/4.4/sf_1.0-17.data or with an "unexpected end ot data" here if I use rspatial https://r-spatial.r-universe.dev/bin/emscripten/contrib/4.4/sf_1.0-18.js.metadata

I must be missing something obvious... hints for troubleshooting?
#rstats #shinylive #webr #wasm

Starting to translate some #RStats learnr tutorials I have to #QuartoLive and I fund this mention to the @rOpenSci 's #RUniverse in the documentation 🤩 🚀

https://r-wasm.github.io/quarto-live/getting_started/packages.html

Loading and Using Packages – Quarto Live Documentation

Working on the next XLConnect release. The master branch build can be installed the usual way:

install_github("miraisolutions/xlconnect")

or using r-universe:

install.packages("XLConnect", repos = c("https://miraisolutions.r-universe.dev", "https://cloud.r-project.org"))

#RStats #XLConnect #Excel #runiverse

R packages by miraisolutions