🧬 Check out agtools, an open-source Python framework for analysing & manipulating assembly graphs.

🔗 GitHub: https://github.com/Vini2/agtools
📜 Preprint: https://www.biorxiv.org/content/10.1101/2025.09.14.676178v1

🙏 Thanks to my amazing co-authors @rrwick @GB13Faithless @griggo_grig @npbhavya @linsalrob

#Bioinformatics #genomics #assembly #assemblygraphs #software

🚀 I just released agtools – a Python API + CLI for working with assembly graphs!

⚙️ Convert, filter, clean, visualise & more.
📦 Install with pip or conda
💻 Code: https://github.com/Vini2/agtools
📖 Docs: https://agtools.readthedocs.io/

⭐ Feedback, contributions, and stars are welcome!

#bioinformatics #python #genomics #assemblygraphs #opensource

Glad to see GraphBin contributing to discover new core genera in fermented red pepper sauce metagenomes.

#bioinformatics #metagenomics #binning #assemblygraphs

https://www.sciencedirect.com/science/article/pii/S221242922301074X