DevelopersIO
FlyBaseThese tracks are listed in a new “RNA-seq long reads (Gonzalez et al., 2023)” sub-section of the “Transcript Level Features” section in JBrowse.
#RNAseq #JBrowse
Scott CainI’m at #TAGC24 and browsing posters when I saw this one. Without looking at the authors, I thought to myself “who reimplemented #JBrowse to be vertical?” Silly me: the #MGI folks just took a wide screenshot and rotated it 😂
How flipping happy does it make me to hear about two students looking to learn about bioinformatics picked up @gmod tools (#tripal, #jbrowse) and put together a full blown genome database Bharat https://www.bharatgenomedatabase.org/
Walked into my first talk at #PAG31 a little late and the slide up on the screen was a #JBrowse screenshot from #MaizeGDB
Ian Holmes#JBrowse2 has been a long time coming - seven years in development, ten if you count the first rumblings from Rob Buels. The payoff is an amazingly versatile, fast, and beautiful suite of programs for visualizing general genome annotations, relationships between genomes, and genomic evidence: https://rdcu.be/c98wf
#JBrowse #GenomeBrowser #Genomics #Bioinformatics #GenomeAnnotation #Genome #Genomes
Me, listening to an interview with Jessica Kissinger (@[email protected]) (https://veupathdb.org/) on the "Talking Biotech" podcast (https://podcastaddict.com/episode/148705391).
Interviewer (Kevin Folta): "So is there a genome browser for all these parasitic genomes?"
Me, to myself and the rest of Starbucks: "yeah there is!"
Dr. Kissinger: answers intelligently (but doesn't mention #JBrowse, but I can get over that).
The Toot of GMODMy friends at CIRAD Montpellier, France are looking for bioinformatics web developer familiar with #GMOD tools (#Tripal @galaxyproject, #JBrowse) to work on a rubber and palm tree genome project: https://recrutement.cirad.fr/job/emploi-ingenieur-e-en-bioinformatique-pour-le-deploiement-d-application-web_6642.aspx?LCID=2057
#GMOD at #PAG today: #JBrowse workshop 1:30 in T&C D (including hands on tutorial), #JBrowse from an implementer's perspective in Next Gen Annotation in Pacific E at 4:20 (blaze!)
https://twitter.com/gmodproject/status/1614694720600707073?s=20&t=9IseT3ZhdO3NY_ybgN7h1w
