Andrea Telatin

191 Followers
188 Following
82 Posts
Head of Bioinformatics at the Quadram Institute πŸ‡¬πŸ‡§, interested in reproducible methods to analyze the #microbiome. searchable profile.
websitehttps://telatin.github.io/
githubhttps://www.github.com/telatin/

BRIG v1.0.0 Released β€” BLAST Ring Image Generator

This is dedicated to Joe Healey Who asked me many years ago to round up the version number to v1.

BRIG creates circular comparison images showing sequence similarity between a reference genome and multiple query sequences as concentric rings β€”
a staple visualisation in microbial genomics.

Download from: https://github.com/happykhan/BRIG/releases/tag/v1.0.0

Or sourceforge: https://sourceforge.net/projects/brig/files/v1.0.0/

Release v1.0.0 Β· happykhan/BRIG

BRIG v1.0.0 First official release of BRIG (BLAST Ring Image Generator) with a modernised build and native installers. Highlights Maven build β€” migrated from legacy Ant scripts to a Maven-based bu...

GitHub

New feature in SeqFu, under development: `seqfu less`.

Multiple visualisations, scrolling, search box (with IUPAC oligo matching).

https://www.youtube.com/watch?v=e77tXBM6fRs

SeqFu dev - preview of `seqfu less` [coming with 1.24.0]

YouTube
Many Linux users have recently reported their fans running at full speed and high temperatures. They discovered that Firefox was consuming all CPU cores, and it turns out that the cause was Firefox's new default AI features. This is how you ruin your product πŸ˜… https://www.theregister.com/2025/08/13/firefox_ai_scoffing_power/
Some users report their Firefox browser is scoffing CPU power

: You guessed it: looks like it's a so-called AI

The Register

"AI companies claim their tools couldn't exist without training on copyrighted material. It turns out, they could β€” it's just really hard. To prove it, AI researchers trained a new model that's less powerful but much more ethical. That's because the LLM's dataset uses only public domain and openly licensed material."

tl;dr: If you use public domain data (i.e. you don't steal from authors and creators) you can train a LLM just as good as what was cutting edge a couple of years ago. What makes it difficult is curating the data, but once the data has been curated once, in principle everyone can use it without having to go through the painful part.
So the whole "we have to violate copyright and steal intellectual property" is (as everybody already knew) total BS.

https://www.engadget.com/ai/it-turns-out-you-can-train-ai-models-without-copyrighted-material-174016619.html?src=rss

It turns out you can train AI models without copyrighted material

It's just a pain in the ass.

Engadget

> I find my feelings about #AI are actually pretty similar to my feelings about #blockchains: they do a poor job of much of what people try to do with them, they can't do the things their creators claim they one day might, and many of the things they are well suited to do may not be altogether that beneficial. And while I do think that AI tools are more broadly useful than blockchains, they also come with similarly monstrous costs.

- @molly0xfff

https://www.citationneeded.news/ai-isnt-useless-2/

AI isn't useless. But is it worth it?

AI can be kind of useful, but I'm not sure that a "kind of useful" tool justifies the harm.

Citation Needed
Exited to be at the @nf_core #hackathon 2024, from the local site we organised at the Quadram Institute in collaboration with CLIMB BIG DATA>
Wow! GitHub now allows you to link your #ORCID to your profile!
https://github.blog/changelog/2024-03-13-authenticate-orcid-id/
Authenticate ORCID iD

β€œAuthenticate ORCID iD

The GitHub Blog
Just published in JOSS: 'Koverage: Read-coverage analysis for massive (meta)genomics datasets' https://doi.org/10.21105/joss.06235
Just published in JOSS: 'Fasten: a toolkit for streaming operations on fastq files' https://doi.org/10.21105/joss.06030
Fasten: a toolkit for streaming operations on fastq files

Katz et al., (2024). Fasten: a toolkit for streaming operations on fastq files. Journal of Open Source Software, 9(94), 6030, https://doi.org/10.21105/joss.06030

Journal of Open Source Software
🚨 I'm excited to release the πšπš’πš—πš’πšπšŠπš‹πš•πšŽ πŸ“¦ for #RStats ! Convert R dataframes to beautiful tables in HTML, LaTeX, PDF, Quarto, Markdown, etc. Easy to learn; minimalist interface; concise syntax; ultra-customizable tables; and zero dependency. 🧡 https://vincentarelbundock.github.io/tinytable/
tinytable