| Website | https://nf-co.re |
| Github | https://github.com/nf-core |
Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.2
#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
#nfcore and #VirJenDB plan a hybrid #hackathon on 17 May as a satellite event of #ViBioM2026 toward #opensource #virus #bioinformatics workflows.
Proposed projects
- expand VirJenDB visualizations with an atlas
- work on an existing nf-core virus workflow
- port your tool to bioconda and other #Nextflow prep
馃憠 Propose your project and indicate your interest: https://forms.gle/KWJYPCXgGotmrhCu8.
馃摑 Registration opens April 2026! More: https://tinyurl.com/mefewbw4.
Pipeline release! nf-core/viralmetagenome v1.1.1 - v1.1.1 - Azure Albatross!
A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.
Please see the changelog: https://github.com/nf-core/viralmetagenome/releases/tag/1.1.1
#epidemiology #fastq #ngs #viralmetagenomics #virology #virusgenomes #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/proteinfold v2.0.0 - Montseny Brook Newt!
Protein 3D structure prediction pipeline
Please see the changelog: https://github.com/nf-core/proteinfold/releases/tag/2.0.0
#alphafold2 #colabfold #esmfold #proteinfoldprediction #proteinfolding #proteinsequences #proteinstructure #nfcore #openscience #nextflow #bioinformatics
X-post from Bluesky:
馃鈥嶐煉籗atellite Hackathon at #ViBioM2026!
Join the #Virus #Bioinformatics + @nf_core Hybrid Collaborative #Hackathon & collaborate on bioinformatic tools and ideas & contribute to reproducible workflows & research infrastructure.
Want to write nf-core modules for virus tools? Convert viral analysis workflows to #Nextflow? Add tools to #bioconda ? Contribute VirJenDB? Or your own project?
(supported by @NFDI4Microbiota )
Register your interest 馃憞
https://evbc.uni-jena.de/events/vibiom2026/hackathon-satellite-event/
Pipeline release! nf-core/rnafusion v4.1.0 - 4.1.0!
Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.0
#fusion #fusiongenes #genefusion #rna #rnaseq #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/ribomsqc vv1.0.0 - nf-core/ribomsqc v1.0.0!
QC pipeline that monitors mass spectrometer performance in ribonucleoside analysis
Please see the changelog: https://github.com/nf-core/ribomsqc/releases/tag/v1.0.0
Pipeline release! nf-core/longraredisease v1.0.0 - Longraredisease 1.0.0 !
Please see the changelog: https://github.com/nf-core/longraredisease/releases/tag/1.0.0
Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch!
Assembly and binning of metagenomes
Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.4.1
#annotation #assembly #binning #longreadsequencing #metagenomes #metagenomics #nanopore #nanoporesequencing #nfcore #openscience #nextflow #bioinformatics
Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger!
Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
#10xgenomics #longreadsequencing #nanopore #rnaseq #scrnaseq #singlecell #nfcore #openscience #nextflow #bioinformatics
NFDI4Microbiota
James Fellows Yates
