Sébastien Matamoros

22 Followers
39 Following
61 Posts
Medical molecular microbiologist at the Amsterdam University Medical Centra. Interested in microbial genomics, bioinformatics and AMR.
RT @marilenharo
The most popular platform for SARS-CoV-2 genome data, GISAID, is in crisis. I talked to scientists from eight countries about the future of pathogen-genome sharing. Here are a few highlights of my latest story for @Nature https://www.nature.com/articles/d41586-023-01517-9 (1/6)
GISAID in crisis: can the controversial COVID genome database survive?

The most popular repository for sharing SARS-CoV-2 sequence data has come under increasing scrutiny. Scientists and funders around the world must now consider what lies ahead for the open sharing of genome data.

Good to be back at the #ABPHM23 . Nerds from Amsterdam-UMC and Amsterdam GGD are on the ground. Great presentations and stimulating discussions all day long!
Really happy to be back at ABPHM this year! Looks like a great program!
Great Q from @BillHanage on "convos about metadata" from @Dr_Patiyan's talk on bioinformatics coordination in Australia.
Patiyan says this is critical & more than "trust us", but clarifying "here's what we can do if we have it, here's what we can't do if we don't". #ABPHM23
If you're at #ABPHM23 and interested in making awesome pan-genome graphs, be sure to stop by & chat to @mrcmolari from @richardneher's lab about PanGraph during the showcase! 📊📉🦠⭕
RT @nidovirus2023
📢📢📢Coming soon⌛️⌛️⌛️:
The XVIth international @nidovirus2023 symposium in beautiful Montreux this May🤩🤩🤩.
Do not miss an exciting talk from Emma Hodcroft @firefoxx66 on #Genomics, #genetics #Diversity & #evolution 🧬🧬🧬

Interesting review:

'Metagenomic Sequencing in the ICU for Precision Diagnosis of Critical Infectious Illnesses'

https://pubmed.ncbi.nlm.nih.gov/36941644/

Metagenomic Sequencing in the ICU for Precision Diagnosis of Critical Infectious Illnesses - PubMed

This article is one of ten reviews selected from the Annual Update in Intensive Care and Emergency Medicine 2023. Other selected articles can be found online at https://www.biomedcentral.com/collections/annualupdate2023 . Further information about the Annual Update in Intensive Care and Emergency Me …

PubMed
I’m probably always going to wear a kf94 or kn95 when flying. I see no compelling evidence showing that getting sick on a business trip or vacation is better than wearing a mask for a couple hours.
Costs of two vancomycin-resistant enterococci outbreaks in an academic hospital | Antimicrobial Stewardship & Healthcare Epidemiology | Cambridge Core

Costs of two vancomycin-resistant enterococci outbreaks in an academic hospital - Volume 3 Issue 1

Cambridge Core
Our perspective on wastewater surveillance came out in @sciencemagazine a few days back. If you're interested in genomic surveillance for COVID-19 or pretty much any infectious pathogen (including bacteria and protists), definitely make sure to check it out! We discuss recent advances, limitations of current approaches, exciting new directions for research, and the types of methods we'll need to develop to further expand our capabilities. https://www.science.org/doi/10.1126/science.ade2503