Willem van Schaik

1,057 Followers
503 Following
433 Posts
Director of the Institute of Microbiology and Infection, University of Birmingham. Prof of Microbiology and Infection: microbial genomics, metagenomics & evolution of antibiotic resistance. All opinions mine. He/him

Evolution of a cross-feeding interaction following a key innovation in a long-term evolution experiment with Escherichia coli

https://www.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.001390

Caroline B. Turner, Zachary D. Blount, Daniel H. Mitchell, and Richard E. Lenski

#evolution #adaptation #experimental_evolution
#ecology #microbiology
#LTEE #OA #science

Evolution of a cross-feeding interaction following a key innovation in a long-term evolution experiment with Escherichia coli

The evolution of a novel trait can profoundly change an organism’s effects on its environment, which can in turn affect the further evolution of that organism and any coexisting organisms. We examine these effects and feedbacks following the evolution of a novel function in the Long-Term Evolution Experiment (LTEE) with Escherichia coli . A characteristic feature of E. coli is its inability to grow aerobically on citrate (Cit−). Nonetheless, a Cit+ variant with this capacity evolved in one LTEE population after 31 000 generations. The Cit+ clade then coexisted stably with another clade that retained the ancestral Cit− phenotype. This coexistence was shaped by the evolution of a cross-feeding relationship based on C4-dicarboxylic acids, particularly succinate, fumarate, and malate, that the Cit+ variants release into the medium. Both the Cit− and Cit+ cells evolved to grow on these excreted resources. The evolution of aerobic growth on citrate thus led to a transition from an ecosystem based on a single limiting resource, glucose, to one with at least five resources that were either shared or partitioned between the two coexisting clades. Our findings show that evolutionary novelties can change environmental conditions in ways that facilitate diversity by altering ecosystem structure and the evolutionary trajectories of coexisting lineages.

microbiologyresearch.org

I am moving most of my sci comms to BlueSky, which I find far more user-friendly than Mastodon.

I will remain on Twitter but my account there will be locked for extended periods of time.

Threads is a non-starter as it does not cover the EU (also: not a fan of Meta).

Not sure how much time I will have to cross-post to this platform unless somebody knows of an app that allows me to simultaneously post on Mastodon and BlueSky.

French research centre behind controversial Covid paper found to have used questionable ethics processes

Institution used concerning approval procedures for hundreds of studies, review says

The Guardian

Going to get the popcorn out to watch the fall-out from this.

Major data analysis errors invalidate cancer microbiome findings https://www.biorxiv.org/content/10.1101/2023.07.28.550993v1

Thorough analyses now, unlike the first preprint from Gihawi et al. that got a huge rebuttal.
Original preprint: https://www.biorxiv.org/content/10.1101/2023.01.16.523562v1

Rebuttal: https://www.biorxiv.org/content/10.1101/2023.02.10.528049v1

#cancermicrobiome #microbiome

While I like the scientific chat on Mastodon, I am missing the mix of that, and current events, and just random stuff that Twitter used to provide (before a billionaire moron took over) on here.

That does not mean I am leaving, but engagement will be lower than it was on Twitter. Perhaps that is not a bad thing.

The Microbiology Society's journal 'Microbiology' is seeking Senior Editors to play a key strategic role in the journal. Applications close on 7 August 2023.

https://microbiologysociety.org/news/full-news-listing/microbiology-senior-editor-call-for-expressions-of-interest.html

Microbiology Senior Editor: call for expressions of interest

Programs to detect AI discriminate against non-native English speakers, shows study

Over half of essays written by people were wrongly flagged as AI-made, with implications for students and job applicants

The Guardian

In the Institute of Microbiology and Infection of the University of Birmingham, we organise a yearly Summer School for 16/17-year olds from our city. The program includes lectures, lab work and other activities (infectious diseases escape room!) and is great fun for all involved.

The future is bright with kids like these!

Good news (if true): 'UK edges closer to rejoining EU’s £85bn Horizon science programme' https://www.theguardian.com/politics/2023/jul/05/uk-edges-closer-to-rejoining-eu-horizon-science-programme-brexit?CMP=share_btn_tw
UK edges closer to rejoining EU’s £85bn Horizon science programme

Talks on returning as an associate member after Brexit row are close to agreement, say diplomatic sources

The Guardian

UK universities draw up guiding principles on generative AI | Artificial intelligence (AI) | The Guardian

https://www.theguardian.com/technology/2023/jul/04/uk-universities-draw-up-guiding-principles-on-generative-ai

UK universities draw up guiding principles on generative AI

All 24 Russell Group universities have reviewed their academic conduct policies and guidance

The Guardian