| website | https://codialab.github.io/ |
🚀 SQZ v0.2.0 released!
🔄 Rewritten core algorithm → faster + more robust (fixes graph edge cases)
✨ New commands:
• compress-partial
• compress-additional
• compress-full (now works on compressed graphs)
• check-compressibility
• test
Today I released panacus v2.2. It comes with a few new features:
1. it can now output HTML nice, self-contained, interactive report page for pangenome stats
2. it allows to output stats for all features (bp, node, edge) at once
3. it accepts now gzip compressed GFA files (must end with .gz)
https://github.com/marschall-lab/panacus/releases/tag/0.2.2
Curious about the HTML report page?
You can find a demo here https://htmlpreview.github.io/?https://github.com/marschall-lab/panacus/blob/main/docs/chr22.hprc-v1.0-pggb.histgrowth.html
GFAffix v0.1.5 released!
This version
- fixes a bug where self-edges went missing,
- ensures that reference-path de-collapse does not introduce uncovered nodes and edges, and
- preserves the input GFA header line when printing the transformed graph.
- supports MacOS X arm64
For Linux/ Mac OSX x86_64 install with
mamba install -c conda-forge -c bioconda gfaffix
or download binaries from
