Monash Bioinformatics Platform

@[email protected]
180 Followers
47 Following
15 Posts

We are a collaborative service group that helps researchers tackle data science challenges in genomics, proteomics and structural biology. Toots by multiple members of the Monash Bioinformatics Platform.

"nobot"

Webhttps://bioinformatics.erc.monash.edu
Githubhttps://github.com/MonashBioinformaticsPlatform/
Monash Bioinformatics PlatformOct 3, 2024
Paul HarrisonOct 3, 2024
This week the Monash Genomics and Bioinformatics Platform did a bulk RNA-Seq workshop, covering end-to-end from experimental design, through library preparation, then using web tools to run an analysis pipeline and dig into differential expression.
Monash Bioinformatics PlatformMar 24, 2023
Phil EwelsMar 8, 2023

I feel very lucky that @SeqeraLabs agreed to take on the @MultiQC project when I joined, so that it can continue to grow and help the bioinformatics / scientific community 🧬🎉📈
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RT @SeqeraLabs
Genomic data management can be a challenge, but with #MultiQC, it doesn't have to be.

This open-source tool, with '000s of users, helps researchers quickly and easily assess the quality of their genomics data across multiple samples 🧬💻

Lea…
https://twitter.com/SeqeraLabs/status/1633415167361916929

Seqera Labs on Twitter

“Genomic data management can be a challenge, but with #MultiQC, it doesn't have to be. This open-source tool, with '000s of users, helps researchers quickly and easily assess the quality of their genomics data across multiple samples 🧬💻 Learn more: https://t.co/iXq9NK0YmN”

Twitter
Monash Bioinformatics PlatformMar 10, 2023
Kira CookMar 9, 2023

Scientists isolated enzyme (Huc) that allows soil bacteria to consume hydrogen from the air and convert it into energy, producing electricity directly when exposed to hydrogen.

@nature #Pedology #Science @MonashBioinfo #Enzyme #microbiology

https://www.livescience.com/scientists-discover-enzyme-that-can-turn-air-into-energy-unlocking-potential-new-energy-source

Scientists discover enzyme that can turn air into energy, unlocking potential new energy source

A relative of the tuberculosis bacterium has long been known to convert hydrogen from the air into electricity. Now, scientists have discovered how.

Live Science
Monash Bioinformatics PlatformDec 1, 2022
Sonika TyagiNov 30, 2022
I am pleased to share that I will be moving to @RMITComputing @RMIT in early 2023 as an Associate Professor of Digital Health
I look forward to working with new colleagues and being part of the brand new #DigitalHealth hub under the leadership of Prof Kerryn Butler-Henderson and Prof @karinv
Monash Bioinformatics PlatformNov 28, 2022
Dr Andrew LonsdaleNov 28, 2022

This is my first toot, mundanely to clarify for the #ABACBS2022 conference that the preferred hashtag is now #ABACBS22

@SimonSadedin @pansapiens @MonashBioinfo @pfh @tanyaaneichyk @BeardyMcJohnFace

Monash Bioinformatics PlatformNov 28, 2022
#abacbs2022 kicking off with Welcome to Country from Mirana (not forgetting the COMBINE meeting yesterday).
Monash Bioinformatics PlatformNov 28, 2022
Paul HarrisonNov 27, 2022

Getting ready for the #abacbs2022 bioinformatics conference. This is my poster.

In unrelated news, I bought a wacom tablet and some manga authoring software, and it is a lot of fun.

https://logarithmic.net/langevitour/2022-abacbs/

Monash Bioinformatics PlatformNov 23, 2022
Michał KrassowskiNov 23, 2022

How do Reactome pathways get collapsed to gene sets?

I noticed GMT files from Reactome (and Reactome in MSigDB) sometimes include identifiers of genes which are negatively regulated by given pathway. It looks like a bad thing for GSEA and friends. I wonder if this is intentional or not. An example is IL18 in IL10 signalling pathway (https://reactome.org/content/detail/R-HSA-6783783).

Reactome | Interleukin-10 signaling

Reactome is pathway database which provides intuitive bioinformatics tools for the visualisation, interpretation and analysis of pathway knowledge.

Monash Bioinformatics PlatformNov 23, 2022

Join our team ! There's an opportunity as a Senior Research Fellow (Bioinformatician), working with both the Monash Bioinformatics Platform and clinical researchers at the Australian Centre for Blood Diseases, Central Clinical School.

Job advert: https://careers.pageuppeople.com/513/cw/en/job/641277/senior-research-fellow-australian-centre-for-blood-diseases

Job Search

Jobs at Monash
Monash Bioinformatics PlatformNov 22, 2022
Andrew PerryNov 22, 2022

At the latest ARDC techtalk by @Sbollmann_MRI and Audrey Stott - "Containers for Scientific Software Distribution Service including security scanning and CVMFS"

Great proposal for providing a community-lead container build and distribution infrastructure for HPC in Australia.

Slides at: https://sites.google.com/ardc.edu.au/techtalk2020/talks (video later)

TechTalk2020-22 - Talks

Next meeting - Talk 18 - 22 Nov 22, 1.00pm AEDT Containers for Scientific Software Distribution Service including security scanning and CVMFS. Steffen Bollman, UQ and Audrey Stott, Pawsey. Sign up to the mailing list to get a calendar invite.