Video is now available for the BRC Analytics webinar that took place on Oct 30 where we introduced workflows and Galaxy integration. See the video here:
https://youtu.be/IM2lgHTO-tg

Also, mentioned in the webinar is this survey:
https://psu.zoom.us/survey/cpLUmO0gadf18TQe_n4oFJeS7asvqGdaroZ0AkmEa4JEci8ISpY.q9gFW5kkP1O5Juwc/view?id=vZwIiSabSteec8gmQS0-KA#/sharePreview
which will help us direct early development efforts and provide direction for the next webinar.

@galaxyproject
#UseGalaxy #VEuPathDB (1/1)

BRC Analytics Q&A (Workflows) 2024-10-30

YouTube

One hour warning: we are hosting a BRC Analytics Q&A where we will demo
workflows. Join to discuss and provide feedback!

Wednesday, Oct 30 at 1PM EDT/1700UTC
http://gxy.io/zoom-brc-24-10-30

@galaxyproject
#UseGalaxy #VEuPathDB

Join our Cloud HD Video Meeting

Zoom is the leader in modern enterprise video communications, with an easy, reliable cloud platform for video and audio conferencing, chat, and webinars across mobile, desktop, and room systems. Zoom Rooms is the original software-based conference room solution used around the world in board, conference, huddle, and training rooms, as well as executive offices and classrooms. Founded in 2011, Zoom helps businesses and organizations bring their teams together in a frictionless environment to get more done. Zoom is a publicly traded company headquartered in San Jose, CA.

Zoom Video

Webinar reminder: we are hosting a BRC Analytics Q&A where we will give an early
demo the "Analytics" part of the site: BYO data and plug it into workflows that
run on publicly-funded computing resources. Join to discuss!

Wednesday, Oct 30 at 1PM EDT/1700UTC
http://gxy.io/zoom-brc-24-10-30

@galaxyproject
#UseGalaxy #VEuPathDB

Join our Cloud HD Video Meeting

Zoom is the leader in modern enterprise video communications, with an easy, reliable cloud platform for video and audio conferencing, chat, and webinars across mobile, desktop, and room systems. Zoom Rooms is the original software-based conference room solution used around the world in board, conference, huddle, and training rooms, as well as executive offices and classrooms. Founded in 2011, Zoom helps businesses and organizations bring their teams together in a frictionless environment to get more done. Zoom is a publicly traded company headquartered in San Jose, CA.

Zoom Video

Please join Anton Nekrutenko and the dev team for the first webinar for BRC Analytics (https://brc-analytics.org). This will be a Q&A where we will present the BRC Analytics roadmap, outlining how we hope to help the #parasite and #vector #genomics communities.

Webinar info:
https://psu.zoom.us/j/95358731919?pwd=3kKhOBgb3YCvYa3moycO6qgwlfy708.1
Friday, Oct 4
1 PM EDT/10 AM PDT

We will be taking questions as well as providing information about avenues for following up on development efforts. #VEuPathDB

@brc_analytics

BRC Analytics - BRC Analytics

This is the first post from the BRC Analytics account. Please boost so it gets seen by any parasite or vector genomics researchers here. #VEuPathDB

https://mstdn.science/@brc_analytics/113228178597155098

BRC Analytics (@[email protected])

I am pleased to announce the first of many webinars for BRC Analytics (https://brc-analytics.org). This will be a Q&A with Anton Nekrutenko; in this Q&A, we will present the BRC Analytics roadmap, outlining how we hope to help the #parasite and #vector #genomics communities. https://psu.zoom.us/j/95358731919?pwd=3kKhOBgb3YCvYa3moycO6qgwlfy708.1 Friday, Oct 4 1 PM EDT/10 AM PDT/1700 UTC #VEuPathDB

mstdn.science

I am pleased to announce the first of many webinars for BRC Analytics (https://brc-analytics.org). This will be a Q&A with Anton Nekrutenko; in this Q&A, we will present the BRC Analytics roadmap, outlining how we hope to help the #parasite and #vector #genomics communities.

https://psu.zoom.us/j/95358731919?pwd=3kKhOBgb3YCvYa3moycO6qgwlfy708.1

Friday, Oct 4
1 PM EDT/10 AM PDT/1700 UTC
#VEuPathDB

BRC Analytics - BRC Analytics

Ik im preaching to the choir on here, but I do genuinely get the pushback from cloudbrained ppl that "we don't need #p2p data infra because Amazon is giving it to us for free rn, and if they stop the NIH would step in because they dont want to lose all the data"

Whelp, an enormous set of 12 databases of pathogen data just went poof when the funding dried up. The only way they are able to bring back a temporary static copy is because other foundations and universities stepped in, but aside from the death of the active databases, how long will that last?

P2P data infrastructure is not some radical pie in the sky Pipedream. It is the only means for making sustainable nonprofit repositories of scientific data. It's open data that's the pipedream without P2P.

Not only can it be done in a way thats compatible with existing cloud infrastructure, it would be strictly additive to its capacity, and in the case that funding dries up, can continue to exist as long as it is useful to the people affected, who can combine whatever storage and bandwidth resources they have.

The alternative of continuously needing to recreate databases, catastrophic loss, and eventually the NIH becoming totally beholden to paying increasing fractions of its tiny budget to AWS spells a grim, grim future for open data.

I've written about this before, and am working on it, but every time this happens my Cassandra complex grows greater: https://jon-e.net/infrastructure/#peer-to-peer-as-a-backbone

The db in question: https://veupathdb.org/

#VectorBase #VEUPathDB #OpenData #OpenScience

Decentralized Infrastructure for (Neuro)science

Decentralized Infrastructure for (Neuro)science
#VEuPathDB
I've been sending out messages to people who work in parasite and vector genomics to ask for help gathering "user stories" for analyses that they used to do on VEuPathDB. If you are one such person and I haven't reached out to you yet, please consider visiting https://help.brc-analytics.org/t/veupathdb-user-stories/13 to participate in the discussion about workflows so that BRC Analytics (https://brc-analytics.org) can cover as many analysis workflows in this space as possible.
VEuPathDB User stories

This topic is a place to collect “user stories” for analyses that used be done at VEuPathDB, in an effort to allow us to construct similar tools/workflows at BRC Analytics. Please reply to this post to add yours.

BRC Analytics
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023

Abstract. The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) is a Bioinformatics Resource Center funded by the Nat

OUP Academic

The renewal of #VEuPathDB & #FungiDB contract is in preparation. The success is likely to depend on strong support from users worldwide.

Consider signing the support letter by Deb Bell-Pederson & the Fungal Genetics Policy Committee:
https://tinyurl.com/support4FungiDB

Responses must be received by 8 Aug 2023.

N.b. the team asks for signatures onky from lab heads. VEuPathDB users may wish to add their name to other community letters:
https://sites.google.com/view/VEuPathDB

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