Mastodawn

I learned, that I am the first to write a reporter plugin, which is part of the #Snakemake organization.

That will change. @fbartusch is working on an #ROCrate plugin. Yours truly is working on a #nanopub plugin. Both will ease publishing workflow analysis metadata and making our computing a bit more transparent. Our motivation? Well, did you ever read a data analysis paper (e.g. from an #Bioinformatis group) recently? See?

#SnakemakeHackathon2026

Galaxy-Team der Uni Freiburg Oct 23

Specification for RO-Crate 1.2 released
https://galaxyproject.org/news/2025-06-04-ro-crate-1-2-release/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #EuroScienceGateway #rocrate #fair #research_data #research #data

Christian Meesters Oct 17

> Your abstract 'Live Demo: From Snakemake Run to Scholarly Record - Automatic Nanopublications & Workflow Run RO‑Crate Generation' has been successfully submitted. It is registered with the number #150. You will be notified by email with the submission details.

I have quite some work to do ...

PS should have tagged you @fbartusch 😉
#nanopub #ROcrate #Snakemake #derse26

Galaxy-Team der Uni Freiburg Oct 14

From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025

https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025

#OpenScience #ReproducibleResearch #GalaxyProject #ROCrate #WorkflowHub #Bioinformatics #FAIRData #ResearchTools #LifeSciences #EuroScienceGateway

blog posts: RO-Crate and WorkflowHub at the European Galaxy Days 2025 | Research Object Crate (RO-Crate)

The European Galaxy Days took place from 1-3 October 2025 in Freiburg im Breisgau, Germany. Users, developers, teachers, and administrators of Galaxy in Europe gathered to discuss new developments in...

galaxyproject Oct 14

From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025

https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025

#OpenScience #ReproducibleResearch #GalaxyProject #ROCrate #WorkflowHub #Bioinformatics #FAIRData #ResearchTools #LifeSciences #EuroScienceGateway

blog posts: RO-Crate and WorkflowHub at the European Galaxy Days 2025 | Research Object Crate (RO-Crate)

Guillaume Louvel Mar 27, 2025

Just learned about RO-crate to ensure your datasets have standardized metadata. Are there other standards out there?

https://www.researchobject.org/ro-crate/about_ro_crate

#Openscience #FAIR #ROcrate

Research Object Crate (RO-Crate)

RO-Crate is a community effort to establish a lightweight approach to packaging research data with their metadata. It is based on schema.org annotations in JSON-LD, and aims to make best-practice in formal metadata description accessible and practical for use in a wider variety of situations, from an individual researcher working with a folder of data, to large data-intensive computational research environments.

ljc Feb 25, 2025

Webby #FDO at #deRSE25
- Intro to JSON-LD https://doi.org/10.5281/zenodo.14920117
- Intro to webby FDOs https://doi.org/10.5281/zenodo.14882665
- Intro to #FAIRSignposting https://doi.org/10.5281/zenodo.14882785
- Intro to #ROCrate https://bit.ly/derseROC
- Demo by @SenckenbergWorld https://tinyurl.com/webbyFDO-demo-deRSE25

@NFDI @ZBMED

An Introduction to Schema.org and JSON-LD

Name: An introduction to JSON-LD Description: This presentation tutorial introduces Schema.org and JSON-LD, explaining their importance and providing examples of JSON-LD metadata in action. Keywords: metadata, structured data, linked data, semantic web, Schema.org, JSON-LD Guiding Questions What is Metadata? What is Schema.org? What is JSON-LD? What are the types of JSON-LD? How can JSON-LD be visualized? Learning Outcomes Understand what metadata is and why it is essential for organizing, discovering, and reusing data. Learn the importance of Schema.org and why it is necessary. Explore JSON-LD, its structure, and its different types. Requirements/Pre-requisites Some knowledge of the Semantic Web and Linked Open Data would be an advantage Additional info/Metadata Time estimation: 15 minutes Level: Beginner / Introductory Published: 2025-02-24 Latest modification: 2025-02-24 License: CC-By 4.0 Version: 1.0.0 Identifier: DOI:10.5281/zenodo.14920117 Citation: Ravinder, R., & Castro, L. J. (2025, February 24). An introduction to Schema.org and JSON-LD. Zenodo. https://doi.org/10.5281/zenodo.14920117

Zenodo

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ZB MED Feb 25, 2025

Experts from ZB MED are represented at #deRSE25 with several contributions. Today at 10am there will be a A 1.5-hour tutorial, introducing “webby FDOs”, a practical approach to FDOs using Research Object Crate (#ROCrate) and FAIR Signposting - with @ljcastro and Rohitha Ravinder, among others from @NFDI4DS. ogy.de/51ov

Donald Hobern Jan 29, 2025

Planning #FAIR packaging of #plant #phenomics #ResearchData - our current focus is on #ROCrate with #JsonLD to describe domain concepts using #MIAPPE, likely #SSN for sensors, #ProvO (or just #ISA) for provenance, public #vocabularies for each partner's measurement types, etc. and lots of image and CSV files.

#MachineLearning is a key use for the #data.

Should we also be looking at #Croissant?

If so, does anyone have experience of combining Croissant and RO-Crate?

Any insights welcomed.

multimeric Jan 18, 2025

I've open sourced RdfCrate, a Python library I've been using at work to generate RO-Crates for research metadata.

It was motivated by finding that RDF triples are easier to work with than JSON-LD, and that rdflib is a brilliant foundation to build on top of.

https://github.com/WEHI-SODA-Hub/RdfCrate

#rocrate #rdf #rdm

GitHub - WEHI-SODA-Hub/RdfCrate: Library for building RO-Crates using rdflib

Library for building RO-Crates using rdflib. Contribute to WEHI-SODA-Hub/RdfCrate development by creating an account on GitHub.

GitHub