Containers and security at #Pearc23 today.
Yes, please! Containers are fantastic for so many aspects of research computing, addressing the security aspects unique to this use will be incredibly helpful for adoption into our work
@jhc I think this might be the paper: https://www.nature.com/articles/s41598-023-29340-2
We were talking about better coding practices, reproducibility, and how this can lead to more citations at #PEARC23 yesterday. Nice to see more evidence of that
The Systems Biology community has taken numerous actions to develop data and modeling standards towards FAIR data and model handling. Nevertheless, the debate about incentives and rewards for individual researchers to make their results reproducible is ongoing. Here, we pose the specific question of whether reproducible models have a higher impact in terms of citations. Therefore, we statistically analyze 328 published models recently classified by Tiwari et al. based on their reproducibility. For hypothesis testing, we use a flexible Bayesian approach that provides complete distributional information for all quantities of interest and can handle outliers. The results show that in the period from 2013, i.e., 10 years after the introduction of SBML, to 2020, the group of reproducible models is significantly more cited than the non-reproducible group. We show that differences in journal impact factors do not explain this effect and that this effect increases with additional standardization of data and error model integration via PEtab. Overall, our statistical analysis demonstrates the long-term merits of reproducible modeling for the individual researcher in terms of citations. Moreover, it provides evidence for the increased use of reproducible models in the scientific community.
I just gave a talk at SE4RS'23 at PEARC:
“The Changing Role of RSEs over the Lifetime of @ParslProject" by @danielskatz, @benc, Yadu Babuji, Kevin Hunter Kesling, Anna Woodard and Kyle Chard
paper: https://doi.org/10.48550/arXiv.2307.11060
slides: https://doi.org/10.5281/zenodo.8180120
This position paper describes the Parsl open source research software project and its various phases over seven years. It defines four types of research software engineers (RSEs) who have been important to the project in those phases; we believe this is also applicable to other research software projects.