Timothee Lionnet

@successprocess
347 Followers
554 Following
9 Posts
NYU School of Medicine Faculty. We use advanced microscopy technologies to understand gene expression. Opinions my own. lab website:http://www.timotheelionnet.net/
NYU's Tandon School of Engineering is seeking to fill a great senior position, the Dibner Family Chair in the History and Philosophy of Technology and Science, which is focused on "promoting humanistic perspectives on science and technology." Nice dept with xlnt colleagues https://apply.interfolio.com/115940
Apply - Interfolio

RS-FISH is a new #FIJI plugin for single-molecule FISH analysis
https://www.nature.com/articles/s41592-022-01669-y
I spent an hour playing with it. Installation was very easy & instructions of use are clear. I got nice spot detection on a not-so-nice FISH image.
I need to learn more about this tool, particularly using with masks & batch processing - but seems very nice & easy to use.
@preibischs @successprocess
#mRNA #fluorescence #smFISH #SingleMolecule #microscopy #imaging
RS-FISH: precise, interactive, fast, and scalable FISH spot detection - Nature Methods

RS-FISH is a user-friendly software for accurate spot detection that is applicable to smFISH experiments, spatial transcriptomics, and spatial genomics. The approach enables fast spot detection in even very large volumetric datasets.

Nature

RS-FISH was just released as open access article in @naturemethods

RS-FISH is a user-friendly software for accurate spot detection that is applicable to smFISH experiments, spatial transcriptomics, and spatial genomics. The approach enables fast spot detection in even very large volumetric datasets.

https://github.com/PreibischLab/RS-FISH
https://github.com/PreibischLab/RS-FISH-Spark

https://www.nature.com/articles/s41592-022-01669-y

GitHub - PreibischLab/RS-FISH: Tool for precise, interactive, fast and scalable FISH spot detection

Tool for precise, interactive, fast and scalable FISH spot detection - GitHub - PreibischLab/RS-FISH: Tool for precise, interactive, fast and scalable FISH spot detection

GitHub
what remains of birdland, with sharp observation from Laurie Segall:

Hi everyone๐Ÿ‘‹ #preLights is a #preprint highlights service run by the biological #community and supported by #Co_Biologists allowing researchers to:

๐Ÿ”Ž Sift through the growing volume of preprints.
๐Ÿ’ก Highlight new thinking or new techniques across the biological sciences.
๐Ÿ“ Comment on preprints that are of particular interest.
๐Ÿ‘ฅ See comments and opinions of other researchers.

Toots from Reinier Prosรฉe, the preLights community manager.

#Introduction #Biology #ECRs #Science #AcademicMastodon

Publishing open access now costs more than buying Twitter

OK, this is a combination of a mild rant and a targeted question.

I have a patient with one of these awful, misleading, anxiety-inducing variants of uncertain significance (VUS). Everything bad about modern medical genomics is embodied in this useless category of result. 1/

Hello everyone!