Norman Rzepka

@normanrz
75 Followers
54 Following
73 Posts
Co-founder of scalableminds.com and racemap.com. Working on making large-scale image analysis easier for life scientists webknossos.org.
Dad. Fullstack Dev. (he/him)
Webhttps://normanrz.com
Twitterhttps://twitter.com/normanrz

The much awaited connectome of the male central nervous system of the fruit fly, Drosophila melanogaster:

"Sexual dimorphism in the complete connectome of the Drosophila male central nervous system", Berg et al. 2025 https://www.biorxiv.org/content/10.1101/2025.10.09.680999v1

"contains 166,696 neurons spanning the brain and ventral nerve cord, fully proofread and comprehensively annotated including fruitless and doublesex expression and 11,691 cell types."

A collaboration between #HHMIJanelia, #MRCLMB and many others.

#neuroscience #connectomics #Drosophila

Better ML for cryo-ET starts with better benchmarks. We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge. The result: community models beat expert tools. Read more in the @natmethods.nature.com article that just came out: πŸ”— doi.org/10.1038/s415...

A realistic phantom dataset fo...

🌟Big new feature🌟

Rotate the viewports. You can now freely rotate the orthogonal viewports. Trace your objects in the best angle.

Davi Bock on the fly connectome, its uses, its impact beyond – and his life.
https://www.uvm.edu/magazine/news/thoughts-fly
#neuroscience #neuroscientists #biographies #connectomics
Thoughts Fly | UVM Magazine | The University of Vermont

πŸš€ Advancing Retinal Connectomics!

Prof. David Berson from Brown University discussed strategies for large-scale segmentation in retinal connectomics at the vEM Data Challenges Symposium.

πŸŽ₯ Watch the recorded session here: (https://youtu.be/vO8lro_wlz8?feature=shared)

David Berson on Large scale Retinal Connectomics

YouTube

πŸŽ‰ Zarr-Python 3 is here! πŸŽ‰

- Full support for Zarr v3 spec
- Chunk-sharding for more efficient data storage
- Major performance boosts with async I/O & parallel compression

πŸ’» pip install --upgrade zarr
πŸ’» conda install --channel conda-forge zarr

Blog post: zarr.dev/blog/zarr-python-3-release/

We just released zarr-python 3.0! It ships with support for sharding, performance improvements, better extensibility and a fully modernized code base. Check out the docs for details: zarr.readthedocs.io/en/stable/
I want to thank everybody who helped with this big lift! It was a pleasure. @zarr

Hi, Zarr community! πŸ‘‹

🚨 Big news: Zarr-Python 3.0 is dropping next week! 🚨

If your project depends on Zarr-Python, make sure to check out the migration guide to get ready for the update.

Guide: https://zarr.readthedocs.io/en/latest/user-guide/v3_migration.html

More updates soon! πŸ§‘πŸ»β€πŸ’»

3.0 Migration Guide β€” zarr 3.0.0rc2.dev10+g584d66d documentation

Happy holidays from all of us at WEBKNOSSOS! β„οΈπŸŽ„

We’re grateful for your trust and collaboration in 2024. Here’s to a New Year full of discoveries and progress! 🧠

I don't think I saw this on social media at all: a bunch of very clever people (including our team) has put together a federated bioimage repository based on OME-Zarr with 500TB of data in 4 months! https://ome.github.io/ome2024-ngff-challenge/
ome2024-ngff-challenge