Moritz Negwer

@moritz_negwer@mstdn.science
988 Followers
2.6K Following
13.8K Posts

Neuroscientist by training, tinkerer by nature. Now scanning transparent mouse brains with light-sheet microscopes. Microscopy, clearing, data crunching, tinkering.

Working as postdoc at @radboudumc with Nael Nadif Kasri and Corette Wierenga, looking at neuron-distribution differences in mouse models of ASD.

Married, father of two. Toots in English, German, Dutch. Boosts a lot.

opted into tootfinder for full-text indexing. Check it out: https://www.tootfinder.ch/index.php?join=1

It’s live: The Anti-Autocracy Handbook- The Scholars’ Guide to Navigating Democratic Backsliding. The need for this is self-evident given current events around the world and in particular in the U.S. The team of authors includes experts from relevant fields and several authors with first-hand experience of living under autocracy.
 
a pdf of the handbook is freely available for download at the short link https://sks.to/autocracy and there is an associated Wiki that will continue to be expanded and updated.
 
Please share!
The Anti-Autocracy Handbook: A Scholars' Guide to Navigating Democratic Backsliding

The Anti-Autocracy Handbook is a call to action, resilience, and collective defence of democracy, truth, and academic freedom in the face of mounting authoritarianism. It tries to provide guidance to scholars navigating the growing global trend of democratic backsliding and autocratization, in particular in the U.S. To this end, it sets out how autocracies often follow a common playbook, built around the “3 Ps”: populism, polarization, and post-truth. Leaders present themselves as voices of “the people” against “corrupt elites”, inflame societal divisions, and undermine facts to avoid accountability. This leads to a cascade of dangers for scholarship, including censorship, restrictions on funding and research collaboration, and even violence. The Trump administration serves as a contemporary example, with policies that curtail international scientific cooperation, revoke research grants, and suppress studies related to public health, climate change and minority issues. Because open inquiry and dissent are central to science and academia—qualities antithetical to authoritarian control—academia is often among the first targets of autocrats. To help scholars resist authoritarian developments, the handbook highlights both historic and contemporary measures aimed at attacking scholars, their institutional environments, and their scholarship. The handbook also sets out a framework for action based on personal risk level—low, medium, high, or extreme. This is designed to help scholars think about their own risk and purposefully choose actions in line with it. The handbook considers tools for enhancing digital safety and highlights the importance of ongoing documentation, preserving imperilled data, and creating distributed archives as a defence against erasure. It also calls on scholars to tell their stories—publicly or anonymously—to inspire others, maintain accountability and preserve a historical record. Accompanying the handbook is a living wiki that will continue to incorporate new developments and provide updates on global efforts by scholars to push back against authoritarianism and safeguard the democratic foundations that enable free inquiry.

Zenodo

Heute war ein Schulfest. Da gab es einen Quizstand. Eins underer Kinder (9) wollte schummeln, kam zu mir und bat, ob ich "schnell bei ChatGPT" nachfragen könne nach der Frage, ob die Legislative in den USA im Weißen Haus oder im Capitol sitze. Danach folgten weitere solcher Fragen. (Edit: Das Quiz warn nicht für 9jährige, sondern einfach ein Stand auf dem Hof, wo vor allem größere Kinder waren, aber kleinere Kinder turnten da rum und wollten auch mitmachen).

Wir haben später nochmal über diese Situation gesprochen. Ich habe gefragt, warum es nach ChatGPT gefragt hat. Die Erklärung war, dass der Lehrer bei einer Frage vorher mit den Kindern die Lösung mit Google und ChatGPT "gesucht" habe und nur ChatGPT hat sie richtig gewusst.

Kleine Anekdote, aber da steckt viel drin. Ich habe nochmal erklärt, was eine Suche mit Google eigentlich ist und das Google keine Antworten liefert bzw. eigentlich liefern sollte und dass sie eventuell ein Versuch einer KI gesehen haben, die dafür bekannt ist, besonders schlecht zu sein. Aber auch, dass ChatGPT gar keine Wissensdatenbank ist und halluzinieren kann. Das Kind war stark irritiert davon, weil im Sprachalltag von Kinder, Schule, Medien ChatGPT quasi als Superpower imaginiert wird und überhaupt nicht klar ist, dass ChatGPT nicht dafür da ist, um Wissensfragen zu beantworten.

Wir konnten das jetzt klären, aber sonst wird das wohl nicht geklärt. Das macht mich nicht besonders glücklich. Ich habe in den letzten Jahren nun schon mehrfach kurze Medienunterrichtseinheiten an den Schulen der Kinder zu Computer-nahen Themen gemacht. Aber das ist eben nur ein Tropfen auf den heißen Stein. Das läuft wirklich extrem schief gerade. Und hier ist auch nochmal eine Alterslinie erkennbar: Je jünger die Kinder, desto selbstverständlicher sind für sie LLMs in der Lebensumgebung, während die älteren Kinder sie als "neu" auch eher skeptisch betrachten.

"A cyclist can go 3 or 4 times faster than a pedestrian, but uses 5 times less energy. The bicycle is the perfect transducer to match metabolic energy to impedance of locomotion. Equipped with this tool, man outstrips efficiency of not only all machines, but all other animals as well."
—Ivan Illich, 1974.
Grafieken over verkoop en gebruik antibiotica in veesector NL in case toegevoegd aan site.
https://datagraver.com/antibiotica-voor-veesector/
Antibiotica voor veesector

Jaarlijks rapporteert de Autoriteit Diergeneesmiddelen over de verkoop en het gebruik vn antibiotica voor de veesector. In 2009 heeft de Tweede Kamer, na jarenlange stijging van gebruik, bepaald dat voor 2015 een significante verlaging noodzakelijk was. Dat doel is in dat jaar net gehaald. Hier de ontwikkeling eerst in verkochte hoeveelheid en daarna in gebruik...

Datagraver

reminder that I have 20+ years of data experience and I'm looking for some kind of Data Scientist/Analyst/Analytics Engineering gig, remote in the US (I'm in Portland, OR)

I would like to be doing something that makes the world a bit better, and every one has data, so it seems like that should be possible.

https://www.linkedin.com/in/amsantos/

Reboosts and links to job posts are most welcome!

#GetFediHired

fMRI unifies categorical/dimensional visual cortex views. Face/body/scene areas encode multi-dimensions, tuning to sub/cross-category features, with local clusters & sparse distribution, suggesting multidimensional tuning key. #Neuroscience www.biorxiv.org/content/10.1...

biorxiv.org/content/10.110...

ICYMI: In September 2024, The Carpentries submitted a proposal for 1.5 million USD to the U.S. National Science Foundation (NSF) Pathways to Enable Open-Source Ecosystems (POSE) Program, and were extremely pleased to learn that the proposal was recommended for funding.

However, we have had to rescind our proposal because it was flagged for DEI content, namely, for “the retention of underrepresented students, which has a limitation or preference in outreach, recruitment, participation that is not aligned to NSF priorities.”

Since we are no longer in the running for this funding, we are actively seeking donors and a cohort of funders who align with our mission and core values and want to support our work.

Find out in this blog post announcement how you can help us by making a recurring donation, or reaching out to potential donors on our behalf, or connecting us with potential donors and program officers, or collaborating with us to apply for grants, and many other ways you can support our mission: https://carpentries.org/blog/2025/06/announcing-withdrawal-of-nsf-pose-proposal/

Announcing Withdrawal of NSF Pathways to Enable Open-Source Ecosystems Proposal

In September 2024, The Carpentries submitted a proposal to the U.S. National Science Foundation (NSF) Pathways to Enable Open-Source Ecosystems (POSE) Program. This project would position The Carpentries as a leading open source ecosystem and further solidify our independence as a 501(c)(3) nonprofit organisation. Developing a proposal of this magnitude (1.5 million USD) involved a significant amount of preparation, from conceptualisation of the idea to navigating the complex submission process. It was the first time The Carpentries did it on our own, with our Associate Director, Erin Becker, leading as principal investigator.

The Carpentries

What is citizen neuroscience and why does it matter?

Image credit: Ionut Stefan

I started this article with a clear idea: talk to you about cool neuroscience projects that used “the power of the people” to find out something interesting about the brain. In other words, make citizen neuroscience more well-known, since, as the name suggests, it’s supposed to involve citizens and all that. But those who’ve been here before probably know that I like to start my articles with a good definition of what we’re actually discussing, to make sure we’re all on the same page. And more often than not, the concept turns out to be fuzzier than I expected. This time was no exception.

The definition

“C’mon, what can be so complicated about citizen neuroscience?!” Believe me, I had the same thought. In theory, it’s all quite simple: citizen neuroscience is a subfield of citizen science, and that refers to citizens engaged in the process of generating science. But… engaged how? Do they collect data? Formulate hypotheses? Write up results? Are they doing this independently or do they need to collaborate with someone whose official job is to do science? Are they doing this for free or should they be paid? These are just some of the aspects to consider when it comes to defining citizen (neuro)science.

Depending on the project, it can be any combination of the above, and sometimes more. On the one hand, having such a broad and flexible definition is great because it allows citizen science to be inclusive and adaptable. On the other hand, it can be tricky to get a good grasp of the field. In turn, that makes it difficult not only to learn about it, but also to properly catalogue, evaluate, and fund such initiatives.

Still, the flexibility matters more here. So the solution isn’t to come up with an all-encompassing definition, but to stay aware of the fuzziness surrounding it.

The why and the how

Now that we’re somewhat clear on the “what”, we can move on to the finer details. First, why do we need citizen neuroscience in the first place? Why isn’t academic science enough? For today, I’ll focus on two points: the large amount of data and the lack of broad enough data. Secondly, if citizen neuroscience is important, how can we actually make it happen?

More data than manpower

Understanding the brain requires a lot of data. So much data, in fact, that neuroscientists sometimes generate more data than they have the capacity to analyze. And yes, they do try to use AI, but no matter what you might’ve heard, AI isn’t magical and human input is still very much necessary. That’s why data analysis is one area where citizen contributions can be very helpful, provided a couple of conditions are met.

Take Eyewire and FlyWire as examples. They are both projects focused on creating a map of connections between neurons: Eyewire looks at a piece of the human retina, whereas FlyWire recently finished mapping the entire brain of a fruit fly (Drosophila) down to the synapse level. To understand how that works, imagine you have a bundle of braided wires, which you slice into many paper-thin cross-sections and you photograph these slices. What you get is a huge stack of 2D images that you can use to reconstruct individual wires. However, that requires you to go through those images one by one, tracing the path of each wire as it twists, turns, splits, and merges.

That’s how neuron tracing works too. Here, AI can provide an initial guesstimate of the path, but someone still needs to manually go through it and check if it did a good job. Now, to get a sense of the scale: for the fruit fly brain, for example, there were about 7.000 slices to be checked, and about 140.000 neurons that were eventually mapped. That’s an enormous amount and something that wouldn’t have been possible without the contribution of hundreds of citizen scientists.

Eyewire made that possible by turning neuron tracing into a game where players earn points for accurate tracing and where that accuracy is determined based on community consensus. FlyWire built on that, using the data from Eyewire to train its AI, and employing a similar system for its citizen contributors. Both projects are great examples of how citizen neuroscience can work when done right.

Of course, this begs the question: is citizen neuroscience the one true solution to the massive amounts of data in all of neuroscience? Well, not really. It definitely helps, but not all projects tick the boxes that made Eyewire and FlyWire so successful: a low barrier to entry, an engaging task, and strong infrastructure to support both the science and the people doing it. And when human data is involved, access becomes much trickier (for good reason), making such initiatives a lot more difficult to develop.

But although not all analyses lend themselves to this blueprint, that doesn’t mean citizen involvement in neuroscience ends here.

Not enough brains in the data

Which brings us to the second point on the agenda: neuroscience needs even more data than it has at the moment. I know, it seems counterintuitive: if it can’t handle what it already has, why add more? But you see, neuroscience is a heterogeneous field. On the one hand, there are areas like connectomics (what we discussed above) that produce tons of rich data from small sample sizes (only one retina or only one fruit fly brain, for example). On the other hand, there are the areas that try to draw conclusions about humans as a whole. For that, researchers tend to use whatever is at hand, which historically meant 15-20 WEIRD psych undergrads (WEIRD stands for Western, Educated, Industrialized, Rich, Democratic).

Citizen neuroscience projects in this direction allow researchers to expand beyond their immediate surroundings. One such example is the Music Lab, an online platform where you can take part in fun experiments related to music perception (and potentially get hard proof of how bad you are at recognizing tunes, as a certain blog author did). Another one is Neureka, an app-based initiative which allows people to track their mood and behavior over time and which aims to use that information for detecting mental disorders and developing appropriate interventions.

These are behavioural projects, but with the advent of consumer-grade neurotech, the possibility of collecting brain-related data at home isn’t so far-fetched anymore. People are already using actigraphy for sleep tracking. Portable eye trackers can capture real-world gaze behavior. And more tools are on the way.

While I’m really looking forward to seeing how the field will develop, this article wouldn’t be complete without mentioning some of the challenges that still need to be sorted out. From the researchers’ perspective, quality in both data collection and analysis is crucial. From the participants’ perspective, as we hinted above, the task has to be easily accessible and rewarding. Plus, contributions should be properly acknowledged. With respect to the scientific process as a whole, accountability needs to be clearly defined – who’s responsible for the project, for what goes wrong, for how the data is handled and stored, for how the results are published, etc. Finally, a quick glance at the geographic distribution of such projects will tell you that they’re a reflection of the underlying socioeconomic background of the world: they mostly originate in developed Western countries. That’s hardly surprising, but if we want to reach a universal understanding of brain and behavior, then we need to build a system that includes more of the globe.

What to do

So why should care? Because understanding the brain takes more than lab coats and fMRI scans. It needs broader participation, and that includes people who aren’t part of academia.

And what can you do? If you have free time to spare, get involved in an open project (Google is quite helpful, but if you’re in the EU, it’s worth checking out this website first). If you’re a researcher, think about how you could open up your work to wider participation. And if you’re a funding agency: well, someone’s got to pay for all this.

Also, if you’re involved in a cool citizen neuroscience project or know of any such projects, feel free to drop them in the comments below.

What did you think about this post? Let us know in the comments below. And if you’d like to support our work, feel free to share it with your friends, buy us a coffee here, or even both.

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References
Alemanno, M., Di Pompeo, I., Marcaccio, M., Canini, D., Curcio, G., & Migliore, S. (2025). From Gaze to Game: A Systematic Review of Eye Tracking Applications in Basketball. https://doi.org/10.20944/preprints202503.2114.v1

Jafarzadeh Esfahani, M., Sikder, N., Horst, R. ter, Weber, F. D., Daraie, A. H., Appel, K., Bevelander, K., & Dresler, M. (2023). Citizen neuroscience: wearable technology and open software to study the human brain in its natural habitat. https://doi.org/10.31234/osf.io/4mfcd

Vohland, K., Land-Zandstra, A., Ceccaroni, L., Lemmens, R., Perelló, J., Ponti, M., Samson, R., & Wagenknecht, K. (Eds.) (2021). The Science of Citizen Science. Springer. https://doi.org/10.1007/978-3-030-58278-4

#connectome #music #neuroscience

Announcing Withdrawal of NSF Pathways to Enable Open-Source Ecosystems Proposal

In September 2024, The Carpentries submitted a proposal to the U.S. National Science Foundation (NSF) Pathways to Enable Open-Source Ecosystems (POSE) Program. This project would position The Carpentries as a leading open source ecosystem and further solidify our independence as a 501(c)(3) nonprofit organisation. Developing a proposal of this magnitude (1.5 million USD) involved a significant amount of preparation, from conceptualisation of the idea to navigating the complex submission process. It was the first time The Carpentries did it on our own, with our Associate Director, Erin Becker, leading as principal investigator.

The Carpentries

New preprint from the labs of Richard Bayliss and Eileen Kennedy (+ me). Defining a novel mechanism of protein-protein interaction that is phospho-dependent & using structure to design cell penetrating disruptors of the mechanism.
Great work from first author Vanda Gunning and colleagues.

https://doi.org/10.21203/rs.3.rs-6862805/v1

Mechanistic Design of Cell-Penetrating Disruptors for a Phospho-Dependent Interaction

The complex formed by transforming acidic coiled coil 3 (TACC3) and clathrin heavy chain (CHC) enhances mitotic spindle stability and strength by cross-linking microtubules. The interaction is dependent on phosphorylation of TACC3 at S558 by Aurora-A. Previously, we elucidated the structural basi...

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Wonderful to chat with Paul on Brain Inspired, where we discuss many things. Among them: What are we brain researchers trying to do here (wrt causality)? I also stick my neck out to predict the next big breakthrough in emotion research.

0:00 – Intro
6:12 – Nicole’s path
19:25 – The grand plan
25:18 – Robustness and fragility
39:15 – Mood
49:25 – Model everything!
56:26 – Epistemic iteration
1:06:50 – Can we standardize mood?
1:10:36 – Perspective neuroscience
1:20:12 – William Wimsatt
1:25:40 – Consciousness

Thanks for having me!

https://braininspired.co/podcast/214/