Leonid Kostrykin

10 Followers
22 Following
23 Posts
🔸PhD in computer science 🔸 Researcher at @uniheidelberg & @fz_juelich 🔸Passionate about computer graphics, computer vision, image processing, and open source
ORCIDhttps://orcid.org/0000-0003-1323-3762
GitHubhttps://github.com/kostrykin
Wrapping up a fantastic week at the #BioHackEU24 🎉 Project 17 worked (also) on the future integration of the BioImage Archive and BioImage Model Zoo with #useGalaxy, which will enable automatic import of both images and #AI models, streamlining automated #ImageAnalysis workflows.

@wendibacon1 @hrhotz @kostrykin @abretaud @bebatut

only four images per mastodon post. Not doing your talks justice but things are moving fast here.

Communities are what fills #GalaxyProject with life!

Very entertaining and informative lightning talks from representatives of the single-cell, small-Galaxy admins, imaging, genome annotation and microGalaxy communities of practice.

Thanks @wendibacon1 @hrhotz @kostrykin @abretaud @bebatut for your talks and all your work.

and maintaining a #UseGalaxy instance is, of course, a cool "hobby" @hrhotz ;-)

NumPy 2.0.0 was released today! 🥳

It is also a friendly reminder to update your requirements.txt file with the NumPy version if your code is running old versions to avoid fun debugging 😂

Checkout the release notes: https://numpy.org/news/

#python #data #datascience #machinelearning #numpy

NumPy - News

Why NumPy? Powerful n-dimensional arrays. Numerical computing tools. Interoperable. Performant. Open source.

I was glad to present our most recent work on automated cell segmentation at #ISBI2024 today, and thanks to everyone who joined for discussions! Our novel graph pruning scheme for cell cluster splitting leads so significant improvements in computational efficiency, without decaying the segmentation accuracy. And, most importantly, this work is already available on #usegalaxy.eu! https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/imgteam/superdsm/ip_superdsm/0.2.0+galaxy1
Galaxy

Galaxy is a community-driven web-based analysis platform for life science research.

An immersive first day of the 21st IEEE International Symposium on Biomedical Imaging in Athens concluded #ISBI2024

Ob Genomanalyse von Tierarten oder des Coronavirus – der in Freiburg beheimatete europäische #GalaxyServer ist ein wichtiges Werkzeug für datenintensive Forschung. Bioinformatiker Björn Grüning @bgruening erklärt, warum. https://www.badische-zeitung.de/wir-nennen-es-die-demokratisierung-der-datenanalyse

@galaxyproject @galaxyfreiburg @[email protected] #galaxyproject

"Wir nennen es die Demokratisierung der Datenanalyse"

Ob Genomanalyse von Tierarten oder des Coronavirus – der in Freiburg beheimatete europäische Galaxy-Server ist ein wichtiges Werkzeug. Bioinformatiker Björn Grüning erklärt, warum.

Badische Zeitung
Happy to be back to Freiburg for a whole week of Image Analysis in Galaxy Hackathon #UseGalaxy

Happy to share that our newest paper on our latest iteration of SuperDSM,

*ROBUST GRAPH PRUNING FOR EFFICIENT SEGMENTATION AND CLUSTER SPLITTING OF CELL NUCLEI USING DEFORMABLE SHAPE MODELS*

has been accepted for presentation at the IEEE International Symposium on Biomedical Imaging!

See you in Athens :)

#ISBI2024 https://invt.io/1txb2jzx8yh

Join me at IEEE ISBI 2024 in Athens, Greece from 27-30 May 2024.

Register now

Graphical retrospectives of personal and community-wide contributions

Web-based tool to keep track of activities within the different Galaxy communities based on the Git histories of the relevant repositories on GitHub.