Ron Beavis ❌If I wanted to find all known ubiq sites for Mouse, where should I look? Is there a db somewhere. @RonBeavis I have a suspicion you will know this :)
Brett Phinney
- 212 Followers
- 174 Following
- 224 Posts
I have been seen hanging out in the UC Davis Genome Center Proteomics Core for a while now and they haven't kicked me out yet!
@RonBeavis thank you ! I’ll check it out
@UCDProteomics You can find my contribution at
ftp://ftp.thegpm.org/projects/ω-mod
or
http://ftp.thegpm.org/projects/ω-mod
It has info for several mods (one of which is GGyl/ubiquitin) in human, mouse, rat & yeast. It gets updated monthly.
https://www.clubhouse.com/invite/1djuwJ4Vryd67KE608qDDzqKzwWIZ85XYd:cSGta-n3TL7ldlndrmNr5ld8d4YBmt6eECfXak3tS-U hey - you should join us Jan 31, 10:00 am for Proteomics Old-Time Radio Hour.
Man why do they always use my pic and not you @benneely.com 🤣 #proteomics #teamProteome
ChatGPT peer reviewer? Nah, that would cost more to the Journals than the current system lol
I can't believe I haven't seen FUNRICH before! It's awesome! especially it's link to vescilpedia!! The is some ev data we acquired over the weekend http://www.funrich.org/
Has anyone ever managed to determine how many protein translations per mRNA molecule are made for each of the mRNA species present in a cell? The estimates of translations/mRNA I have been able to find are not very helpful, as there seems to be a wide range without any systematic understanding of why. #proteomics
@pwilmart I feel like this recipe could be a slam dunk for nature methods. What do you think? I mean the recipe isn’t novel , but I still feel like it has a good shot to get in !
Phil WilmarthThere is a new Nature NoMethods article on linear modeling of multi-plex TMT data (yes, TMT plexes are like batches). If you think that sounds interesting, you can learn all about how to analyze multi-plex (and single plex) TMT data at my GitHub site: https://github.com/pwilmart/Start_Here.
Interestingly (irritatingly?), internal reference scaling (https://www.sciencedirect.com/science/article/pii/S1535947620323938) is not mentioned in the new paper at all. It was published in 2017 in MCP and has over 250 citations at Google Scholar…
