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Bioinformatics Engineer at IUCT Oncopole
Daily user of Snakemake, Bash and Python, can handle R if I really have to.
Passionate about hiking, climbing and outdoors
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githubhttps://github.com/LukaP-BB
@yokofakun "AI just quadrupled the codebase" is not the flex it thinks it is
@plantarum I see, i've rarely had to check for more than one or two wrong indices, so it appeared in the top "unknown" barcodes without having to think too much about it
I'll put it in my bashrc, might need it one day 😁
@plantarum hi, I'm curious about the context that requieres this, is there a specific reason to not demultiplex the samples ? For exemple, bcl2fastq provides a report of index counts when demultiplexed with a samplesheet
@yokofakun pycirclize is a good alternative to circos, with actually useful documentation
@rmflight it should work for installed packages too, I guess you need to install/enable a python language server for it too fully work.
@rmflight I don't know your coding environment but any decent editor with an lsp can provide this functionality, for example in vscode I can jump to function definitons with alt+click, pretty seamless 😁
I was certain it was possible to access alpha missense annotations on uniprot not so long ago, for example here :
https://www.uniprot.org/uniprotkb/P04637/feature-viewer?loadFeatures=true
Does anyone know the reason they are not available anymore ? Any alternative ?
#bionformatics
UniProt

UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.

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