Ming 'Tommy' TangOptimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows https://www.nature.com/articles/s41592-025-02617-2 #spatialtranscriptome
Masaru KoidoOur work to derive hidden knowledge from #spatialtranscriptome by deep learning (DeepSpaCE) was one of the top 100 downloaded cancer papers for Scientific Reports in 2022!
According to https://www.nature.com/collections/ciijehjfha, our paper was ranked 9th in the cancer papers. I will continue to work on developing new methods to encourage data-driven science!
Paper: https://nature.com/articles/s41598-022-07685-4
Tool (DeepSpaCE): https://github.com/tmonjo/DeepSpaCE (ready-to-use for #Visium data).
