Current status of the #proteobench QExactive DDA module, shown yesterday https://fosstodon.org/@olangella/114715175521848642

i2MassChroQ has very good performances and a very low level of missing values

#proteomics
@pappso

https://proteobench.cubimed.rub.de/Quant_LFQ_DDA_ion_QExactive

Thanks for the presentation of the #proteobench work by Marie Locard-Pollet yesterday !

@pappso is involved in this work

#EUPA 2025
#EUBIC

Hello #proteomics,

see you soon at #EUPA 2025 meeting next week in #saintmalo .

@pappso will be there with many posters and short coms.

stay tuned ;)

https://eupa2025-stmalo.fr/en/

#EUBIC #proteobench

The #proteobench project from #eubic is evolving fast.

There are new results available online for the DDA module.

We present our results for i2MassChroQ #PAPPSO compared to other workflows in #proteomics :

http://pappso.inrae.fr/en/news/2024/12/i2masschroq-results-in-proteobench

I've uploaded a new result file in #ProteoBench from @EuBIC_MS

The new results shows how #PAPPSO i2MassChroQ performs compared to other software on the same dataset.

This time, DDA quantification was made without match between run. We can see more features than using MaxQuant+Andromeda with match between run. incredible.

https://proteobench.cubimed.rub.de/DDA%20Quant%20Ion%20Level%20-BETA-

#proteomics

Have you ever noticed how benchmarking #proteomics data analysis can be a wild west?

EuBIC-MS community members did, and started #ProteoBench: An open platform for continuous, easy, and controlled comparisons of proteomics data analysis workflows

Learn more at the upcoming webinar (27 Feb, 18h CET)

Register here https://bit.ly/3SfS4Lf

#teammasspec #bioinformatics