Christos Argyropoulos MD, PhD
Michael KuhnFrom Georg Zeller's group at #EMBL: “PyHMMER: a Python library binding to HMMER for efficient sequence analysis” https://academic.oup.com/bioinformatics/article/39/5/btad214/7131068`
#Python bindings for #HMMER with a better parallelisation strategy
Wrapping over #hmmer http://hmmer.org/ made me appreciate AUTOLOAD in #perl @Perl
The actual code I had to write was minimal , i.e. about 23 lines in the pm file and ~85 in the alienfile, but it ended up "containerizing" (inside perlbrew) all 41 programs of the HMMER and EASEL suites #bioinformatics
#Github repo:
https://github.com/chrisarg/alien-seqalignment-hmmer3
#cpan:
https://metacpan.org/pod/Alien::SeqAlignment::hmmer3
#bioperl relevant modules:
https://metacpan.org/pod/Bio::Tools::Run::Hmmer
https://metacpan.org/pod/Bio::Index::Hmmer
Great start for building one's own programs.
