Genetic Differentiation and Evolutionary Transition-Transversion Bias in Vertebrates by the Example of the CYTB Gene with Emphasis on Mammals and Primates - #microevolution #macroevolution #transitiontransversionbias #mutationprocess #geneticsaturation #generegulation - https://link.springer.com/article/10.3103/S0095452724060045
Genetic Differentiation and Evolutionary Transition-Transversion Bias in Vertebrates by the Example of the CYTB Gene with Emphasis on Mammals and Primates - Cytology and Genetics

Abstract A negative answer to the question about the reducibility of genetic processes at the level of macroevolutionary events to microevolutionary ones has been obtained by analyzing the evolutionary transition-transversion bias and estimating the rates of molecular transformations in a number of vertebrates by the example of the CYTB gene. As a result, it has been established that, at a divergence at a level below families, the frequency of transitions sustains “a jump,” due to which the rate of molecular evolutions increases by an order of magnitude, whereas there occurs a slight predominance of transversion frequencies with a synchronous linear increase in the frequency of different nucleotide substitutions at the levels of orders and higher. An obvious reason for distinctions between the genetic processes of micro- and macroevolution is the leading role of spontaneous mutations in the formation of species. Their canalization results in stable morphological distinctions formed during postnatal ontogenesis. At the same time, the stages of macroevolution are associated with the transformation of organogenesis to be fixed with by changes in the sets of genes governing the nature of gene regulation and the interaction of genes in development.

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Transition Bias and Its Compensation in the Evolutionary Lineage of the Subfamily Murinae (Rodentia): Analysis of Nuclear and Mitochondrial DNA Markers - #molecularevolution #bias #ts/tvindex #geneticsaturation #evolutionaryspecialization #Murinae - https://link.springer.com/article/10.3103/S0095452723060051
Transition Bias and Its Compensation in the Evolutionary Lineage of the Subfamily Murinae (Rodentia): Analysis of Nuclear and Mitochondrial DNA Markers - Cytology and Genetics

A comparative analysis of the rates of molecular evolution, transition bias, and its evolutionary compensation was carried out on mitochondrial (D-loop, Cytb, COI, 12S RNA) and nuclear (IRBP, Fv) DNA markers in the Murinae subfamily. According to the levels of variability, the markers can be divided into three classes: (1) hypervariable (D-loop), (2) rapidly evolving (Cytb, COI), and (3) conservative (12S RNA, IRBP, Fv). The nature of nucleotide substitutions appears by the levels of variability. With the D-loop, there is a maximum initial bias, which is already partially compensated for during the early stages of speciation, and completely compensated at the stages of species divergence. The pronounced bias within the Cytb and COI genes is only partially compensated, moreover at the genus levels. The 12S RNA, IRBP, and Fv genes with a low level of transition bias do not show evolutionary compensation as such, and the decrease of the ts/tv index in the evolutionary lineage has a technical character and is a consequence of a relative decrease of the difference in the frequencies of transitions and transversions against the background of an absolute increase in the frequencies of substitutions. The positive relationship between the intensity of nucleotide substitutions, the level of transition bias, and the rates of its evolutionary compensation proves that these phenomena have the same primary basis.

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