Vitor Pavinato

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113 Following
161 Posts
A wandering lab rat with frequent flyer miles. Brazil-born, France-flavored, and USA-seasoned. Planned to live more in the states, but the gods of immigration already had their decision. Biology enthusiast, but only if it comes with a side of code. Nested for some time in Philly with my flock (wife and son); recently dislocated to my wife’s center of origin. Once spent a summer in Antarctica - turns out penguins make terrible lab assistants. Too smelly, can't pipette.
Homepagehttps://cst.temple.edu/about/faculty-staff/vitor-pavinato
GitHubhttps://github.com/vitorpavinato

RE: https://biologists.social/@biorxiv_evobio/116243585113566308

Check it out our new preprint. We applied our recent method `SFRatios` to estimate selection coefficients for all 134 ordered pairs of synonymous codon changes. Results indicate that natural selection on synonymous codons is weak but sufficient to define codon fitnesses that strongly correlates with observed codon frequencies. Indeed, a model of codon usage with mutation, drift and selection predicts the data better than a model with only mutation and drift.

RE: https://biologists.social/@biorxiv_evobio/116243585113566308

Check it out our new preprint. We applied our recent method `SFRatios` to estimate selection coefficients for all 134 ordered pairs of synonymous codon changes. Results indicate that natural selection on synonymous codons is weak but sufficient to define codon fitnesses that strongly correlates with observed codon frequencies. Indeed, a model of codon usage with mutation, drift and selection predicts the data better than a model with only mutation and drift.

I’m 37 years old and living with end-stage kidney disease in Oregon. I urgently need a living kidney donor. My blood type is A+. NKR covers all costs—travel, lodging, medical, and time off work.

Please visit https://www.nkr.org/PZG643 to learn more. Even if you can’t donate, sharing this post could help me find a match. #KidneyDonation #OrganDonation #ESKD #DonateLife #GiveLife #ShareYourSpare #BeADonor #Transplant #MedicalMiracle

Michael Maattanen Needs a Kidney | Can You Help?

Michael Maattanen Needs a Kidney | Can You Help?

10 simple rules for making your code last beyond your current job: https://docs.google.com/document/d/1jk0R8VL8lq1-LIbW9D5qwCkvxfXEobP0-RqSYF-4Io4/ (aimed at researchers whose grants might suddenly be terminated) and a survey collecting info on canceled NIH grants: https://docs.google.com/forms/d/e/1FAIpQLSfc2UO_130Tk02PWc8ROhEd0I9m9EyzxRlFYwB4UUhiRF-M2Q/viewform because these are the times we live in
10 Simple Rules for making your code last beyond your current job

10 Simple Rules for making your code last beyond your current job This is a draft: the goal is a preprint on ORCID, and then to submit a version of this to PLoS. All suggestions or comments are welcome. If you contribute, please feel free to add your name and ORCID. Help that’s needed: Add refe...

Google Docs
Razzball (@razzball.bsky.social)

Huh, weird

Bluesky Social

Just learned this Fun fact: ””socialist Norway” has almost 2 trillion USD in their Sovereign Wealth Fund.
If everybody quit working today, Norway could maintain its standard of living for more than 400 years.
They nationalized their oil and gave the profits to the government, not shareholders.
Socialism is the enemy of billionaires, but the friend of the middle class.”

#Canada needs to do the same. The whole world needs to do the same.

For those of you wanting a halfway decent representative logo from @pluralistic 's coined word #enshittification, I offer to you this monstrosity for use as you like (just, you know, credit me if you would, please).

We came across this little book last year and we got it for our son's starting library. Yesterday, while going through it and reading/showing things to my son I saw this page and thought it would be relevant to have it here to remind us that democracy needs to be actively cultivated and defended when it is in danger.

#DefendDemocracy #democracy

At a time where the vulnerability of relying on US digital infrastructure and cloud services is huge, our AlgoSoc program pilot to rely on European cloud services is more relevant than ever.

Alternatives are not easy. But necessary.

#infrastucture #sovereignty #cloud #BigTech

https://www.voxweb.nl/nieuws/five-dutch-universities-are-experimenting-with-alternative-european-cloud

Five Dutch universities are experimenting with alternative European cloud - Vox magazine

Scientists from five Dutch universities are experimenting with a cloud system that could provide an alternative to Microsoft365. Radboud University is watching the developments with interest.

Vox magazine