Navin B Ramakrishna

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Research Fellow, Jay Shin Lab, Genome Institute of Singapore. Former Reversade Lab :: PhD Miska & Surani Labs, Gurdon Institute, Cambridge :: Biochem Grad, Oxford. Twitter: @navinbrian

Great new addition to the #preLights5thBirthday #preList!

Samantha Seah, Navin B Ramakrishna & Hui Ting Zhang #astar_gis highlight a #preprint from the #FergusonSmith Lab.

Probabilistic inheritance of intermediate DNA #methylation sites across somatic cell division

👀 https://prelights.biologists.com/highlights/mitotic-heritability-of-dna-methylation-at-intermediately-methylated-sites-is-imprecise/

Induction of fetal meiotic oocytes from embryonic stem cells in cynomolgus monkeys
Mitinori Saitou and coworkers establish in vitro maturation of monkey #pluripotent #stemcells into fetal #oocytes as a unique new model for human #oogenesis
https://www.embopress.org/doi/10.15252/embj.2022112962

An interesting investigation into the periods of human germline competence across the pluripotency spectrum.
Depending on origin, hPGCLCs show progression differences in hindgut co-culture. Glad to have contributed a little! Led by João & Freddy.

Link: https://cell.com/cell-reports/fulltext/S2211-1247(22)01806-X

Hey everyone, Happy Holidays! I come bearing the gift of our last preprint of 2022.

https://www.biorxiv.org/content/10.1101/2022.12.26.521943v1

Will probably run a legit "Toot-orial" in the New Year when people are back, but briefly: We have long been interested in how the genome is packaged in sperm, both as a cool chromatin state and also because several labs have reported that mutations that affect histone modifications in the testis have intergenerational effects. 1/n

Thanks to Eric, Azim, Greg & PhD labmates for support, other PGC researchers for encouraging us to publish, and Chief-Editor of Developmental Cell J. Ann Le Good for expertly mediating the process.
Looking forward to getting the rest of my PhD work out soon too!
In the interest of candour, this publication resulted from my internal PhD examiner Greg Hannon spotting my results tucked in my thesis. He shared that co-first Giorgia Battistoni had experienced the same thing, leading to the collaboration. (Always put every result in your thesis!)
Hopefully, once found, this in vitro system can help escalate biochemical dissection of the mammalian fetal piRNA pathway – for example in finding direct bridging links between Miwi2 and Dnmt3c.

It appears that PGCLCs stall in development likely due to an incorrect physical & signalling environment in EBs.
See Cooke & Moris (2021) for an excellent discussion on the mechanics and extra-cellular cues of this differentiation

https://journals.biologists.com/dev/article/148/23/dev200093/273598/Tissue-and-cell-interactions-in-mammalian-PGC

Tissue and cell interactions in mammalian PGC development

Summary: This Review summarises recent research revealing that primordial germ cell (PGC) development depends on interactions with the surrounding somatic cells and tissues, and that this co-development is crucial for PGC specification, migration and maturation.

The Company of Biologists

So, will we have a mammalian in vitro fetal piRNA model?
Ishikura et al 2021’s reaggregated rTestis m5/7 cells and gonocyte-like cells (GSCLCs) look v. promising, with marked fetal piRNA pathway upregulation.

https://www.cell.com/cell-stem-cell/fulltext/S1934-5909(21)00342-8?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS1934590921003428%3Fshowall%3Dtrue.

Although this was a protracted journey since 2017, I’m very grateful that, Wolf Reik’s lab relooked at the original data in von Meyenn et al 2016 and graciously corrected a mistake with their small RNA data.

Lots went on behind the scenes – but this is an instance of science working well! https://www.cell.com/developmental-cell/fulltext/S1534-5807(22)00809-7