I3D:bio

@i3dbio@nfdi.social
17 Followers
36 Following
18 Posts
I3D:bio is a DFG-funded project to support research data management for bioimaging data in Germany. The I3D:bio comprises legally independent partners, who collaborate on the project.
Websitehttps://www.i3dbio.de

Today!! Join Tom Boissonnet (I3D:bio) , Caterina Strambio De Castillia (BINA), and Maria Mirza (EuBI) for their talk about BioImaging Research Data Management (#RDM) hosted through FocalPlane!

4 p.m., CEST, online! Register here:
https://focalplane.biologists.com/2024/08/22/focalplane-features-data-management/

FocalPlane features... data management - FocalPlane

FocalPlane features... data management - News

FocalPlane
Missed the workshop or would like to host a similar workshop on your own?
https://nfdi.social/@nfdi4bioimage/112360641120521720
The workshop material is now available as an open educational resource on Zenodo:
Fuchs, V. et al.: [Workshop] FAIR data handling for microscopy: Structured metadata annotation in OMERO. https://doi.org/10.5281/zenodo.11109616
NFDI4BIOIMAGE (@nfdi4bioimage@nfdi.social)

Attached: 1 image A 2-day intensive workshop on #FAIR data with structured annotations in #OMERO comes to an end. We enjoyed very much the lively & inspiring discussions from & with the participants who created a lovely atmosphere in this online workshop. 🙏 @nfdi4bioimage.bsky.social @i3dbio #OER material to follow.

Nationale Forschungsdateninfrastruktur (NFDI)

Are you using #OMERO for bioimage data management and want to get more out of your annotations?
Join our workshop about how to leverage structured metadata in OMERO to benefit image analysis and data publication.

Two-day online workshop on April 29th & 30th
Jointly organized by @i3dbio & @nfdi4bioimage
⬇️
https://gerbi-gmb.de/i3dbio/i3dbio-teaching/events-workshops/omero-meta-workshop24/

FAIR microscopy data handling: structured metadata annotation in OMERO - German BioImaging

Workshop Announcement: FAIR data handling for microscopy: Structured metadata annotation in OMERO Location Online, two-day workshop Dates April 29th, 9 a.m. to 4 p.m. and April 30th, 9 a.m. to 3 p.m. Description Microscopy experiments generate information-rich, multi-dimensional data, allowing us to investigate biological processes at high spatial and temporal

German BioImaging
You missed us at #GerBI-GMB Community Meeting in Fulda?
Find here our poster with useful links on microscopy image data management and training material for #OMERO and #metadata. #openaccess #OER #FAIR
https://zenodo.org/doi/10.5281/zenodo.10805203
The Information Infrastructure for BioImage Data (I3D:bio) project to advance FAIR microscopy data management for the community

Research data management (RDM) in microscopy and image analysis is a challenging task. Large files in proprietary formats, complex N-dimensional array structures, and various metadata models and formats can make image data handling inconvenient and difficult. For data organization, annotation, and sharing, researchers need solutions that fit everyday practice and comply with the FAIR (Findable, Accessible, Interoperable, Reusable) principles. International community-based efforts have begun creating open data models (OME), an open file format and translation library (OME-TIFF, Bio-Formats), data management software platforms, and microscopy metadata recommendations and annotation tools. Bringing these developments into practice requires support and training. Iterative feedback and tool improvement is needed to foster practical adoption by the scientific community. The Information Infrastructure for BioImage Data (I3D:bio) project works on guidelines, training resources, and practical assistance for FAIR microscopy RDM adoption with a focus on the management platform OMERO and metadata annotations.

Zenodo
This week, we were at #GerBI-GMB Community Meeting in Fulda discussing bioimage #RDM with the German community of microscopy experts. Thank you for the interest, the exciting exchange about I3D:bio's and our partner project's activities, and the stimulating discussions and ideas from the community.
@nfdi4bioimage #OMERO
OMERO's possibilities for structured data annotation with Tags and Key-Value pairs requires researchers to decide what fits best to their data.
Watch this video by the I3D:bio team member Tom Boissonnet about his recommendations on the use of Tags and Key-Value pairs for optimized data structuring and search:
https://youtu.be/BNZKMiuK7kg?feature=shared&t=438
Many thanks #BINA #AIMM!
AIMM User Group | Meeting 1 December 2023

Meeting of the Automated Image Management and Metadata Annotation (AIMM) User Group on October 6, 2023.Visit this webpage for more details on this group:http...

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