| lab website | https://gibbons.isbscience.org/ |
| https://twitter.com/gibbological |
Want to learn how to process 16S microbiome data, conduct analyses, & visualize results?
Want to learn community-scale metabolic modeling?
Want to hear talks from experts on the gut-brain axis?
Register for the 2024 ISB Virtual Microbiome Series!
Excited to share that Nick Quinn-Bohmann's recent paper is the July cover-article in Nature Microbiology!
Check it out our paper here: https://www.nature.com/articles/s41564-024-01728-4
Cover art (attached) by the amazing Sam D'Orazio, in consultation with Allison Kudla at ISB 🤩
This work was co-supervised by @thaasophobia, & we had help from an amazing team of collaborators.
Microbial community-scale metabolic modelling predicts person-specific short-chain fatty acid profiles and can be used to estimate the impact of dietary, prebiotic and probiotic interventions.
Happy to announce that my last preprint from the Gibbons Lab at ISB is now out at https://www.biorxiv.org/content/10.1101/2024.02.02.578701v1 . In the end it took us almost 5 years to make this work well.
Dietary intake is major factor in many studies but is not easy to measure on a fine-grained level. Our idea was to use metagenomic shotgun sequencing of fecal samples to detect and quantify food-derived DNA.
It still feels a bit unreal to write this but here it comes. After almost 6 incredible years at the Institute for Systems Biology in Seattle I will join the faculty of the Medical University of Graz early 2024 as an Assistant Professor in Computational Microbiome Science. My lab will be part of The Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine and will operate within the Austrian Cluster of Excellence “Microbiomes Drive Planetary Health”....
Here, the authors present a novel approach for inferring in vivo growth phases of human gut bacteria from metagenomic time series data. These inferences can be used to better-constrain community scale metabolic modeling in the gut.
I'm excited to announce that the 2023 ISB Virtual Microbiome Series registration site is live!
We will host a 2-day bioinformatic course and a 1-day symposium Oct. 11-13.
This year's theme is 'how the ecology of our guts protects us from pathogens'
I'm excited to announce that the 2023 ISB Virtual Microbiome Series registration site is live!
We will host a 2-day bioinformatic course and a 1-day symposium Oct. 11-13.
This year's theme is 'how the ecology of our guts protects us from pathogens'
Out online now: Spotlight on 'A changing gut virome ecological landscape with longevity'
@TWilmanski @gibbological
Christian Diener
bioRxiv
Trends in Microbiology
Ram Lab UW