Fred Guillaume

180 Followers
238 Following
19 Posts

New paper out in Ecology Letters with Katja Tielbörger, Amaël Daval, and Charles Mullon 🥳!

Using eco-evolutionary models of annual plants, we show that adaptive plasticity in seed germination promotes genetic diversification and ecological speciation.

http://dx.doi.org/10.1111/ele.70346

Excited to share our latest paper on How does gene expression evolve during adaptation? We used experimental evolution in flour beetles to find out. 🪲

Using a joint transcriptomic and quantitative genetics approach, we show that evolutionary changes in gene expression are predictable and largely driven by indirect selection on connected hub genes.

Published now in Evolution Letters @EvolLetters, spearheaded by Eva L. Koch and Charles Rocabert.

#evolution #genetics
https://academic.oup.com/evlett/article/9/6/719/8304032

Here are some 2024 highlights of PCI and Peer Community Journal.📊 Grateful to everyone who contributed to this success🦸. We're excited and prepared for an amazing 2025🤩!
New paper with Antoine Fraimout on dissecting the genetic architecture of quantitative traits is here
https://onlinelibrary.wiley.com/doi/10.1111/mec.17299
Happy to share this post, and new paper with @AFraimout in Molecular Ecology
https://x.com/AFraimout/status/1762499704448012541?t=nfrIg-zRzPWZcfIsYM53sA&s=09
Antoine Fraimout (@AFraimout) on X

Very happy to see this nice collaboration with @fred_guillaume from @OEB_Helsinki now out in @molecology ! https://t.co/5AxRTtlq19

X (formerly Twitter)
We currently have two open PhD positions available in our group! 1) a project in experimental plant ecology focussing on fitness consequences of trait-mediated interactions between the invasive plant Impatiens glandulifera, native plants and their pollinators (from the plant perspective, see https://ecology.uni-hohenheim.de/flint for full job description)! 2) a project on farmland birds (within the HABIT doctoral college, see https://www.uni-hohenheim.de/en/job-openings?tx_unijobs_joboffers%5Bjoboffer%5D=3605&tx_unijobs_joboffers%5Baction%5D=show&tx_unijobs_joboffers%5Bcontroller%5D=Joboffer&cHash=e0d1e31d1db3c9835bb0dfddedc72be5). Application deadline for both positions is 19 Jan 2024!
Fitness Landscapes of biotic INTeractions and their role for eco-evolutionary biodiversity dynamics: towards theory-based synthesis across interaction types (FLINT): Institut für Landschafts- und Pflanzenökologie

Our first time using @PeerCommunityJournal -- why would anyone pay for-profit publishers when you can get stuff out OA for free? Literally the same peer review, literally the same article.

If you're a researcher and don't know PCI yet, check them. This is the future.

https://peercommunityin.org

Peer Community In - free peer review & validation of preprints of articles

PCI is a non-profit open science organization of scientists to evaluate, recommend and publish research preprints in free open access

Peer Community In

Last year I joined a bunch of very clever people in Chicago for a few days and we put together the bones for a handbook on how to hire, manage and retain data scientists and research software engineers in academic settings. It's now out!

https://zenodo.org/record/8264153

Boosts are welcome - we hope this will be helpful for a lot of people working in the software-producing corner of academia. Thanks to the folks at ADSA and @us_rse for putting it together!

Hiring, Managing, and Retaining Data Scientists and Research Software Engineers in Academia: A Career Guidebook from ADSA and the US-RSE

The importance of data, software, and computation has been recognized in academia and is reflected in the recent rise of job opportunities for data scientists and research software engineers. Big data, for example, created a wave of novel job descriptions before the term Data Scientist (DS) was widely used. Even though software has become a major driver for research (Nangia and Katz, 2017), Research Software Engineer (RSE) as a formal role has lagged behind in terms of job openings, recognition, and prominence within the community. The value of DS/RSE roles is not widely recognized in the academic community yet, and research data, software, and workflows are, in many domains, still regarded as by-products of research. Data Scientists and Research Software Engineers (DS/RSEs) face similar challenges when it comes to careers paths in academia - both are non-traditional academic professions with few incentives and a lack of clear career trajectories. This guidebook presents the challenges and suggestions for solutions to improve the situation and to reach a wide community of stakeholders needed to advance career paths for DS/RSEs.

Zenodo

18 month post doctoral position ecological genomics of aromatic plants

⏱️ deadline June 1

#GWAS in nature #Oligogenic selection #monoterpenes

https://international.au.dk/about/profile/vacant-positions/job/post-doc-position-in-ecological-genomics-of-aromatic-plants

Post doc position in ecological genomics of aromatic plants - Vacancy at Aarhus University

Vacancy at BiRC - Bioinformatics Research Center, Aarhus University

An exciting first post - happy to see @leze’s first PhD project out for you all to read! Would be happy for feedback - we combine simulations with analysis of Arabis alpina to look at load accumulation and genetic purging in sellers versus outcrossers
https://doi.org/10.1101/2022.12.19.521096