Bram van Dijk

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Postdoc @ MPI Plรถn on microbial evolution. Simulating everything that may happen on a grain of sand | ๐ŸŽฎ๐Ÿง‘โ€๐Ÿ’ป๐ŸŽน| they/he | #BiInSci ๐Ÿณ๏ธโ€๐ŸŒˆ

@BrockhurstLab @EvolvedBiofilm Hey Michael, thanks for the feedback! I take your point, and I don't think we disagree.

Personally, I see the distinction as valuable, artificial or not. I don't believe in a single conceptual framework that fits everything. Various descriptions help us communicate about the things we love: cats, microbes, and MGEs.

That said, I fully agree that words shouldn't draw SOLID lines between biological levels. Evolution acts at multiple scales in concert after all :)

Woah, the list of MGEs keeps growing! ๐Ÿคฏ

Tycheposons! But is it pronounced tie-key, tie-chi, or jif?

https://doi.org/10.1016/j.cell.2022.12.006

Calling my PI to say I have another idea side project
But a few minutes in a Google Colab notebook fixed those issues.
Here's the code it initially generated, which has a few minor issues.

ChatGPT: "Write is a piece of code that will generate a bifurcation diagram of the logistic map in Python. The value for r run from 0.8 to 4.5. Plot the last 10 values in the iteration as dots using matplotlib with the ggplot theme."

Result below.

Vertical and horizontal gene transfer tradeoffs direct plasmid fitness - PubMed

Plasmid fitness is directed by two orthogonal processes-vertical transfer through cell division and horizontal transfer through conjugation. When considered individually, improvements in either mode of transfer can promote how well a plasmid spreads and persists. Together, however, the metabolic cos โ€ฆ

PubMed
@Timo_Micro Anne+ is amazing <3
Always nice to see the published version of a paper I enjoyed reviewing. Here the authors "uncover an underlying quasi-stable equilibrium between the opposing forces of radial expansion and natural selection, a phenomenon we term inflation-selection balance" https://www.nature.com/articles/s41467-022-35484-y
Evolutionary rescue of resistant mutants is governed by a balance between radial expansion and selection in compact populations - Nature Communications

Antibiotic and anti-cancer therapy are challenged by mutation-mediated treatment resistance despite many mutations being maladaptive. Here, the authors introduce a system that shows how the probability of the long-term persistence of drug-resistant mutant lineages can be increased in dense microbial populations by acquiring multiple mutations.

Nature