Blog post: how-to on running CellProfiler/Cell Painting analysis on Terra:
https://terra.bio/microscopy-in-the-cloud-cellprofiler-and-cell-painting-on-terra/
| AKA | @ghostpathogen |
| Location(s) | Currently in London, via Australia, Sri Lanka, and the Middle East |
| Writing | https://hostpathogen.substack.com/p/coming-soon |
Blog post: how-to on running CellProfiler/Cell Painting analysis on Terra:
https://terra.bio/microscopy-in-the-cloud-cellprofiler-and-cell-painting-on-terra/
(Not sure if this attempt to quote-post will work but am giving it a shot)
Closing date for this is Thursday - please hurry and apply to come to an amazing city!
Attached: 1 image The deadline for this is being extended for one month due to the summer break - please spread the word! https://www.nature.com/naturecareers/job/12800829/senior-lecturer-lecturer-research-and-teaching-track-4-posts-/ @[email protected] @[email protected] #neuroscience #neurojobs #lectureship #glasgow #scotland #tenure #behavior
We hope that this study leads to more research on the potential for I3C dietary supplementation as a prophylactic or therapy for those at highest risk of Crypto infection - the very young and malnourished.
Please read the full paper for more interesting bits like the prophylactic effect of I3C in neonates, and the potential use of Cryptosporidium as a good small intestinal damage model.
Thanks for reading so far!
7/7
Indole-3-carbinol is a phytochemical enriched in Brassica veggies 🥦🥬 It activates AHR.
Supplementing mouse diets with I3C augments their IEL population.
So we fed mice I3C and challenged them with Cryptosporidium. They were protected!
I went straight home and ate some kale.
6/
We zeroed in on intraepithelial lymphocytes (IELs) because:
- they are very important gut barrier protectors
- they highly express AHR
- they proliferate in response to Crypto infection
- these express greater levels of IFN-g and Granzyme-B
But what about those indoles I mentioned earlier?
5/
And so, a collaborative project was born! We asked if AHR expression in the small #intestine (where crypto exclusively loves to hang out) was also protective.
The short, surprising, *Ron Howard voice* answer? It wasn't.
The real answer was one layer deeper --
Using a series of mouse knockout models, we found that mice lacking AHR expression in their immune progenitor cells were much more susceptible to Crypto infections.
4/
Why work together in the first place? We followed two leads:
☝️A 2016 study (PMID27245413) found that fecal #indole levels in humans negatively correlated with Crypto infections
✌️The transcription factor #AHR (which can be activated by indoles) is vital for protection/repair after epithelial injury or infection in the mouse colon
3/
Connecting the dots is one of the best feelings in research. But with the intestinal #parasite #Cryptosporidium, these dots are often few & far between. So I'm very happy and proud to share our work connecting crypto, intraepithelial lymphocytes, and potentially, food!
Located at the heart of the third largest European university hospital, Marseille Medical Genetics boasts a triple mission: decipher the mechanisms involved in genetic diseases, open new diagnostic and therapeutic pathways and improve the quality of life of patients. From the genetics of rare diseases to developmental biology, from epigenetics to genome dynamics and from bioinformatics to systems biology, the MMG explores all facets of the discipline through a translational approach that focuses on the patient in four main families of pathologies: Central nervous system and neuroendocrine tissues diseases, Neuromuscular diseases, Cardiac pathologies, Accelerated ageing and laminopathies.