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#Bioinformatics, Coding (#Rust, #Python #R), Statistics, Microbial genomics and #Metagenomics, biology. Views don't represent my employer.
twitterhttps://twitter.com/_benjaminv
githubhttps://github.com/bvaisvil

Today is the 25th anniversary of Deus Ex.

I adore that game so much...I might spin it up today. It's been awhile. :)

This is great and sums up many of my thoughts on this “ai” moment
https://hackers.town/@GeoffWozniak/114213465822506806
Geoff Wozniak (@[email protected])

"Why is sentience even a goal?" https://netsettlement.blogspot.com/2025/03/sentience-structure.html

hackers.town
It's time to re-enjoy this golden quote about me and #curl, shown in the most awesome way.
@benjaminv i love jonathan

We also examined his biogeography and attempted to ascertain where he may have originated from.

We found he is related to other sequenced Aldabra tortoises, but he has a contribution from an unknown source.

Our new preprint: "Epigenomic insights into extreme longevity in the world’s oldest terrestrial animal, Jonathan".

Jonathan is estimated to be at least 192 years old - the oldest known terrestrial animal. In this study we examine his genome and epigenome and found changes that may help explain his extreme longevity.

https://www.biorxiv.org/content/10.1101/2025.02.05.636284v1.full

Epigenomic insights into extreme longevity in the world’s oldest terrestrial animal, Jonathan

Giant tortoises exhibit exceptional longevity, often exceeding the human lifespan. To understand the genomic and epigenomic basis of their longevity, awe analyzed the DNA sequence and methylome of Jonathan, an Aldabra giant tortoise (Aldabrachelys gigantea), estimated to be 192 years old. Relative to other giant tortoises (Aldabrachelys gigantea and Chelonoidis abingdonii), we found Jonathan has gene variants in pathways associated with aging, including DNA repair and telomere regulation. Consistent with his advanced age, Jonathan has significant age-related changes in DNA methylation and methylation entropy, compared with a 5-year-old Aldabra individual. Notably, we found that low entropy regions in Jonathan’s methylome were enriched for genes involved in the electron transport chain. This suggests that high-fidelity transcription of these genes may be crucial for extreme longevity. With this data, we propose a model for aging, that links efficient mitochondrial energy production with nuclear maintenance of low methylation entropy. ### Competing Interest Statement The Regents of the University of California are the sole owner of patents and patent applications directed at epigenetic biomarkers for which Steve Horvath is a named inventor; SH is a founder and paid consultant of the non-profit Epigenetic Clock Development Foundation that licenses these patents. SH is a Principal Investigator at the Altos Labs, Cambridge Institute of Science. The other authors declare no competing interests.

bioRxiv

It's a complicated world; things we thought we could count on forever are falling by the day. Take solace in the one immutable fact of the universe:

Oracle are the biggest shitheads on earth.

https://mastodon.de/@ErikUden/113930010311998246

Erik Uden 🍑 (@[email protected])

Attached: 1 image This is a public service announcement to **never** ever use Oracle

MastodonDE

One of my favorite podcasts is Oxide and Friends by @bcantrill and @ahl. The episode on Intel after Gelsinger was excellent:

https://oxide-and-friends.transistor.fm/episodes/intel-after-gelsinger

Bryan and Adam talk at length about deep cultural inertia at Intel and how it's stymied the company's efforts to maintain its leadership position in the market.

They make some interesting and very specific recommendations about how a new CEO ought to change the company to meet the moment.

1/2

Oxide and Friends | Intel after Gelsinger

Holy Sh**! Pat Gelsinger announced his

Oxide and Friends
Great (and scary) visualization of 2024 daily temperatures compared to prior years by the BBC today. Evocative of the iconic Joy Division album cover from 1979: https://www.bbc.com/news/articles/cd7575x8yq5o
World's hottest year: 2024 first to pass 1.5C warming limit - BBC News

Last year was the world's warmest on record, bringing temperatures above a politically symbolic milestone.

BBC News
“There are three elements that fuel our fulfillment: relationships, service, and purpose (but) many of the messages coming at us tell us to prioritize a different triad, the triad of success: fame, wealth, and power.” https://people.com/surgeon-general-vivek-murthy-americans-closing-letter-rethink-how-we-are-living-our-lives-exclusive-8770191
Surgeon General Urges Americans to 'Rethink How We're Living Our Lives' in Closing Letter to the Country (Exclusive)

U.S. Surgeon General Vivek H. Murthy shares his "parting prescription" for the country in a letter shared exclusively with PEOPLE.

People.com