Richard Challis

0 Followers
0 Following
4 Posts
Bioinformatician/software developer. Working at the Sanger Tree of Life Programme. Author of #blobtoolkit and #genomesonatree.

We've just submitted our #genomesonatree (GoaT) manuscript to Wellcome Open Research!

We've designed GoaT as a versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life.

Visit GoaT at https://goat.genomehubs.org to search for your favourite taxon, to explore patterns in genomic metadata or to check out the progress of many of the #EarthBioGenomeProject affiliate projects including #DToL (https://goat.genomehubs.org/projects/DTOL)

#BlobToolKit was designed to make colourful plots to help spot contaminants in fragmented genome assemblies. The latest chromosomal assemblies released by #DarwinTreeOfLife, were threatening to make the traditional blob plots redundant so #BlobToolKit now lets you look inside the blobs to see parameter distributions along each chromosome, e.g. to highlight the centromeric repeats. Try it out at https://blobtoolkit.genomehubs.org/view/ddAraThal4.1/dataset/CAKOER01/blob?plotShape=grid&length--Min=1840000&position--Active=true&xField=position&windowSize=0.01#Settings
BlobToolKit - Viewer