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Public health bioinformatics scientist at CDC. ♥ programming. Podcaster. Proud former TOAST team lead. Statements here are my only voice and not of my employer.
websitehttps://lskatz.github.io

🚨 Teaching bioinformatics? Or learning it solo?
Check out my free & open Fundamentals of Bioinformatics course materials: lectures, slides, and exercises — no coding background required.
🔬🧬👩‍💻

📚 https://github.com/lskatz/fundamentals-of-bioinformatics
⭐️ Star it, share it, and level up!

#bioinformatics #opensource #STEMeducation

GitHub - lskatz/fundamentals-of-bioinformatics

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GitHub
Oops that might have been my gift link. Here is the one with the DOI https://journals.asm.org/doi/10.1128/mra.00963-24

🚨 New paper alert! 🚨
Say hello to Kalamari 🦑—your new go-to resource for genomic epidemiology & pathogen surveillance. 🌍

✅ Representative genomes
✅ Common contaminants
✅ Custom taxonomy
✅ Open-source tools for easy data access

Read it here: https://journals.asm.org/eprint/JUUNS5T3IFWXTE3GARN8/full

@happykhan @andrewjpage Part 2 is now live! Come join us in the second half of the discussion of the movie Contagion. 🧬 Here, or wherever you listen to your podcasts. https://soundcloud.com/microbinfie/136-contagion-part-2
137 Contagion part 2

In a two-part discussion, the hosts analyze the movie Contagion from their expert perspectives, focusing on the film's portrayal of epidemiology and genomics. They note that the movie compresses timel

SoundCloud
@happykhan @andrewjpage ☣ It's live! Come join us in our discussion for the movie Contagion. Here, or wherever you get your podcasts https://soundcloud.com/microbinfie/135-contagion-part-1
135 - Contagion part 1

In a two-part discussion, the hosts analyze the movie Contagion from their expert perspectives, focusing on the film's portrayal of epidemiology and genomics. They note that the movie compresses timel

SoundCloud
☣️ We're excited that we will have Real Bioinformaticians React to The Movie Contagion! Coming soon to your podcast app or wherever you listen to podcasts. 🧬
@happykhan @andrewjpage
The AMAZING @griffie giving a pha4ge talk
Richa Agarwala
Rodney Brister
Nuala O'Leary