Andra Waagmeester

@Andrawaag@genomic.social
184 Followers
45 Following
104 Posts
Wikidatawikidata.org/wiki/User_talk:Andrawaag
iNaturalistinaturalist .org/people/andrawaag
GitHubgithub.com/Andrawaag/
Wikipathwaysorcid.org/0000-0001-9773-4008
Andra WaagmeesterFeb 26, 2024
AT #SWAT4HCLS #Biohackathon, we are already exploring ways to utilise AI to generate SPARQL queries and curate ontologies. For example, by enriching metadata collection using VOID headers. Can these metadata headers be used to feed data to AI approaches and consume AI results?
Andra WaagmeesterFeb 26, 2024
The #SWAT4HCLS #Biohackathon started. We have just inspected the co-hacking spaces available for the participants. There is the hack lounge where we can relax and hack and the Biohackathon room where people can claim a table to work.
Andra WaagmeesterFeb 9, 2024

#SWAT4HCLS #Biohackathon pitch #1 "Publishing FAIR Datasets from Bioimaging Repositories". This proposal aims at making Bioimage repositories, more notably OMERO, FAIR. This probably by building a FAIR Data Point on top of these repositories.

https://www.swat4ls.org/workshops/leiden2024/hackaton/#1_Publishing_FAIR_Datasets_from_Bioimaging_Repositories

SWAT4HCLS 2024 Biohackathon Announcement - Semantic Web Applications and Tools for Healthcare and Life Sciences

We are thrilled to announce an exciting evolution in our hackathon day, a cornerstone of the SWAT4HCLS event. Traditionally, our participants have gathered on

Semantic Web Applications and Tools for Healthcare and Life Sciences
Andra WaagmeesterJan 20, 2024

Last year, we renamed the #SWAT4HCLS hackathon to Biohackathon #SWAT4HCLS. This year, we are extending the format. The last day remains the official hack day, However, during the tutorial and conference day there will be a biohackathon room where we can prepare our activities for that hackathon day.
Please join us for #SWAT4HCLS (https://www.swat4ls.org/) the Biohackathon (https://lnkd.in/eNmFJK7B)

You are also cordially invited to submit biohackathon proposals/pitches: https://lnkd.in/e5GzVVBn

SWAT4HCLS 2024 - Semantic Web Applications and Tools for Healthcare and Life Sciences

The SWAT4HCLS 3-day conference will be hosted in Leiden, The Netherlands February 26-29, 2024.

Semantic Web Applications and Tools for Healthcare and Life Sciences
Show threadAndra WaagmeesterJan 19, 2024
#guessr on dutch municipalities: https://guessr.blinry.org/?Q2039348
Wikidata Guessr

Andra WaagmeesterJan 19, 2024
One very nice example of a data driven game an a great with to start the weekend is guessr. Where you have to guess the actual location of an object. In this link you have to guess the location of university hospitals: https://guessr.blinry.org/?Q1059324 (Q1059324 is the wikidata id for http;//www.wikidata.org/entity/Q1059324. Please share other Qids if your find other fun games to guess. We can use the inspiration at the #swat4hcls #biohackathon.
Wikidata Guessr

Andra WaagmeesterApr 26, 2023
aligining the Cell Ontology with #wikidata at #biocuration2023 @lubianat
Andra WaagmeesterApr 26, 2023
The slides from the #wikidata workshop at #biocuration2023 are now also available as PDF at https://upload.wikimedia.org/wikipedia/commons/f/fb/Obo_Wikidata_at_Biocuration_2023.pdf
Andra WaagmeesterApr 25, 2023
Emerging linked-data profile for #Biocuration2023 at https://scholia.toolforge.org/event/Q111430238
Scholia

Scholia
Andra WaagmeesterFeb 25, 2023

I was told that Moths are child taxa of the taxon Lepidoptera, except those that are butterflies (Papilionoidea). Trying to get all moths from #Wikidata would be possible by the #SPARQL query below, which times out.
https://w.wiki/6Nhu

I created a subset from #wikidata using #ShEx https://doi.org/10.5281/zenodo.7662320.
Loaded the triples into a #Graphdb instance and I am happy because I can now explore the #Moth space on #wikidata.
All on my KDE #slimbook (https://kde.slimbook.es/)