Egon Willighagen5d ago

short write up of #swat4hcls: https://doi.org/10.59350/bmxve-vry14 https://chem-bla-ics.linkedchemistry.info/2026/04/04/swat4hcls-2026.html

Replies to this post show up as comments in the blog post.

SWAT4HCLS 2026

A bit over a week ago, SWAT4HCLS 2026 took place, with the matching biohackathon on Thursday (see this post. I attempted a bit of live coverage on mastodon: day 1 and day 2. But it seems the semantic web community interested in SWAT4HCLS has not found the fediverse yet. So, make sure to check this full list of abstracts.

chem-bla-ics
Egon WillighagenMar 27

#SWAT4HCLS is over.

Today, I am at the #KNCV CTC meeting, where we are launching the #Cheminformatics and #DrugDiscovery working group, as part of the CTC Section

Show threadEgon WillighagenMar 25

LS concluded her talk and mentioned their semantic mapping data is available from Zenodo: https://doi.org/10.5281/zenodo.18350592

#swat4hcls

Semantic Mapping of TREAT-NMD Core Datasets to the CARE-SM

Mapping of the TREAT-NMD Core Datasets to the CARE-SM version 1.0.0

Zenodo
Show threadEgon WillighagenMar 25

last speaker before lunch is Lilly Schuckert about data for neuromuscular diseases

#swat4hcls

Helmholtz Metadata Collab.Mar 25

Final day at #SWAT4HCLS at AmsterdamUMC! Great to be here with Helmholtz KG team from HMC Hub Information & Health 🚀

Highlights included:
– Tutorials on #GraphRAG, SPARQL & provenance
– Inspiring keynotes by Hannah Bast (QLever) & Janna Hastings (LLMs)
– A buzzing poster session with fantastic discussions

And today we’re presenting:
👉 The Helmholtz Knowledge Graph
– building a semantic interoperability layer across @helmholtz

Come by and chat with us 🙌

@swat4hcls
#KnowledgeGraph #Helmholtz

Show threadEgon WillighagenMar 25

third speaker is Sergi Aguiló-Castillo (@Radboud_uni) who will talk about Automated Quality Metrics Assessment in Real World Data for Rare Diseases Registries.

AutoQ-RWD: https://github.com/cmbi/AutoQ-RWD

#swat4hcls #ERDERA

Show threadEgon WillighagenMar 25

the next speaker is Olga Endrich, taking about "Rx Norm for Europe - Toward the representation of medicinal products in the OMOP CDM"

#swat4hcls

Show threadEgon WillighagenMar 25

the first talk after the coffee break is about STELA and "Unifying SNOMED CT Logical Expressions and Textual Descriptions"

#swat4hcls

Show threadEgon WillighagenMar 25

the third talk is introduced by @Andrawaag and remotely given by Robert Hoehndorf, about ontological modelling of dynamic biodiversity consensus

Of course, this is also what the #Wikiblitz ongoing here is about

#swat4hcls

Show threadEgon WillighagenMar 25

the 2nd talk is by a team of two speakers from the IDS team at Maastricht University (Dumontier's group) about Embedding-based Deduplication of Knowledge Graphs using Graph Neural Networks

I think this would be a very interesting alternative to find WikiPathways/Rhea matches we previous did with federated SPARQL!

#swat4hcls