ugly, but it works: I can run a maximum of 50 jobs with a maximum of 500 cpus on our server.

So I run 10 # gatk HaplotypeCaller in parallel in one nextflow process using `make -j 10` ===> 500 gatk HC at the same time.

https://gitlab.univ-nantes.fr/pierre.lindenbaum/gazoduc-nf/-/blob/master/modules/gatk/hapcaller2/main.nf?ref_type=heads#L81

#nextflow #gatk #make #makefile #bioinformatics #workflow