MaxFeb 8
After dithered images my next obsession is 'workflow managers' 🎈Yesterday night I binged some videos from #riffomonas about #reproducible research (CC248 to CC256). He used #snakemake , which looked very nice! Now I also looked up #nextflow It looks fierce!
I am going to learn one of them, and snakemake currently feels more approachable... But what do you think? Any advice? I want to use it in my #bioinformatics #pipeline s; I mainly write in R
#rstats #tidyverse
https://riffomonas.org
Riffomonas

A project dedicated to improving the reproducibility of microbiome analyses

Show threadMaxFeb 8

I found this amazing blog post by Marc Singleton:

https://marcsingleton.github.io/posts/workflow-managers-in-data-science-nextflow-and-snakemake/

Workflow Managers in Data Science: Nextflow and Snakemake | Marc Singleton

Marc Singleton's personal GitHub Pages site

Show threadMaxFeb 8

Okay. #snakemake convinced me 🐍 Looks like a good fit for #openscience projects, and my needs 🫱🏼‍🫲🏻

https://snakemake.github.io/

Snakemake

Show threadMax

I finished the basic #tutorial for #snakemake and it really fits my vibe right now, hehe
Also learned a bit more about #conda along the way. I'll take that

https://snakemake.readthedocs.io/en/stable/tutorial/basics.html

Basics: An example workflow | Snakemake 9.16.3 documentation

Feb 8 at 4:51pmWeb